RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 SKAP2O75563 359 aaPredicted RBP2.48□□□□□ -2.01
CHD3-217ENST00000574022 MBD4O95243 580 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 PRLP01236 227 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 KITP10721 976 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 HARSP12081 509 aaKnown RBP2.48□□□□□ -2.01
CHD3-217ENST00000574022 BRAFP15056 766 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 TSHRP16473 764 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 XPAP23025 273 aaPredicted RBP2.48□□□□□ -2.01
CHD3-217ENST00000574022 TACR1P25103 407 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 PDIA3P30101 505 aaKnown RBP2.48□□□□□ -2.01
CHD3-217ENST00000574022 SLC7A1P30825 629 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 SLC6A11P48066 632 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 HSPA7P48741 367 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 ALDH9A1P49189 494 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 GPR15P49685 360 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 RGS3P49796 1198 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 HK3P52790 923 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 ARL4CP56559 192 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 RTP1P59025 263 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 NKX6-1P78426 367 aaPredicted RBP2.48□□□□□ -2.01
CHD3-217ENST00000574022 NOGQ13253 232 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 PMS2P11Q13670 270 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 PRKG1Q13976 671 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 DAG1Q14118 895 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 NOLC1Q14978 699 aaKnown RBP eCLIP2.48□□□□□ -2.01
CHD3-217ENST00000574022 NOMO1Q15155 1222 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 MPEG1Q2M385 716 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 CCDC93Q567U6 631 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 FKBP15Q5T1M5 1219 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 CIAPIN1Q6FI81 312 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 FAAH2Q6GMR7 532 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 RETSATQ6NUM9 610 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 MZT2BQ6NZ67 158 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 Q6ZNB5 142 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 HEATR3Q7Z4Q2 680 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 CABP7Q86V35 215 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 RHOT1Q8IXI2 618 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 SHISA5Q8N114 240 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 TXLNBQ8N3L3 684 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 SH2D3CQ8N5H7 860 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 GLB1L3Q8NCI6 653 aaPredicted RBP2.48□□□□□ -2.01
CHD3-217ENST00000574022 SNRNP27Q8WVK2 155 aaKnown RBP2.48□□□□□ -2.01
CHD3-217ENST00000574022 TRAPPC12Q8WVT3 735 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 SEC14L1Q92503 715 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 RPGRQ92834 1020 aaKnown RBP2.48□□□□□ -2.01
CHD3-217ENST00000574022 USP13Q92995 863 aaPredicted RBP2.48□□□□□ -2.01
CHD3-217ENST00000574022 ZNF566Q969W8 418 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 ASIC4Q96FT7 647 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 SLC35A4Q96G79 324 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 SCARF2Q96GP6 870 aaPredicted RBP2.48□□□□□ -2.01
CHD3-217ENST00000574022 MAP6Q96JE9 813 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 HHIPL1Q96JK4 782 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 CLPTM1LQ96KA5 538 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 MEGF10Q96KG7 1140 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 FAM167AQ96KS9 214 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 SEC62Q99442 399 aaKnown RBP2.48□□□□□ -2.01
CHD3-217ENST00000574022 FOXB1Q99853 325 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 C7orf25Q9BPX7 421 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 COLEC11Q9BWP8 271 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 IRX2Q9BZI1 471 aaPredicted RBP2.48□□□□□ -2.01
CHD3-217ENST00000574022 AP5M1Q9H0R1 490 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 ATP13A1Q9HD20 1204 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 RBM12Q9NTZ6 932 aaKnown RBP2.48□□□□□ -2.01
CHD3-217ENST00000574022 LMBRD1Q9NUN5 540 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 UCKL1Q9NWZ5 548 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 LRFN1Q9P244 771 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 STOML1Q9UBI4 398 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 FBLN5Q9UBX5 448 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 NIPSNAP3AQ9UFN0 247 aaPredicted RBP2.48□□□□□ -2.01
CHD3-217ENST00000574022 POLG2Q9UHN1 485 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 HDAC9Q9UKV0 1011 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 DENND2AQ9ULE3 1009 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 PLAGL2Q9UPG8 496 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 CRYL1Q9Y2S2 319 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 RABGAP1Q9Y3P9 1069 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 PCDHA3Q9Y5H8 950 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 SNX11Q9Y5W9 270 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 U3KQE9 123 aa2.48□□□□□ -2.01
CHD3-217ENST00000574022 TMEM265A0A087WTH1 108 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 TCRBV5S2A0A599 114 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 GOLGA6L3A6NEY3 463 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 FAM171A2A8MVW0 826 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 F8W8V4 182 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 MYO1FO00160 1098 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 EYA2O00167 538 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 EIF3FO00303 357 aaPredicted RBP2.47□□□□□ -2.01
CHD3-217ENST00000574022 NFIBO00712 420 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 HNRNPDLO14979 420 aaKnown RBP2.47□□□□□ -2.01
CHD3-217ENST00000574022 IRAK2O43187 625 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 FIBPO43427 364 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 SGTAO43765 313 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 NRP2O60462 931 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 PLA2G6O60733 806 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 OPHN1O60890 802 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 ARIH2O95376 493 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 PAPLNO95428 1278 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 CEACAM5P06731 702 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 CELA3BP08861 270 aa2.47□□□□□ -2.01
CHD3-217ENST00000574022 IFIT1P09914 478 aaKnown RBP2.47□□□□□ -2.01
CHD3-217ENST00000574022 FAHP16930 419 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms