RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 BMPR1AP36894 532 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 PHKA2P46019 1235 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 MXD4Q14582 209 aaPredicted RBP9.01□□□□□ -0.97
VPS53-214ENST00000572607 AAK1Q2M2I8 961 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 LARP1BQ659C4 914 aaKnown RBP9.01□□□□□ -0.97
VPS53-214ENST00000572607 TWF2Q6IBS0 349 aaKnown RBP9.01□□□□□ -0.97
VPS53-214ENST00000572607 SRGAP1Q7Z6B7 1085 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 KCNV2Q8TDN2 545 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 PRPF31Q8WWY3 499 aaKnown RBP9.01□□□□□ -0.97
VPS53-214ENST00000572607 ZNF689Q96CS4 500 aaPredicted RBP9.01□□□□□ -0.97
VPS53-214ENST00000572607 NACC1Q96RE7 527 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 CEP89Q96ST8 783 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 POLR3CQ9BUI4 534 aaPredicted RBP9.01□□□□□ -0.97
VPS53-214ENST00000572607 LMAN2LQ9H0V9 348 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 TMEM134Q9H6X4 195 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 RC3H2Q9HBD1 1191 aaKnown RBP9.01□□□□□ -0.97
VPS53-214ENST00000572607 LRWD1Q9UFC0 647 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 COG5Q9UP83 839 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 PIN4Q9Y237 131 aaKnown RBP9.01□□□□□ -0.97
VPS53-214ENST00000572607 GTF3C3Q9Y5Q9 886 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 MRPL42Q9Y6G3 142 aaKnown RBP9.01□□□□□ -0.97
VPS53-214ENST00000572607 ARHGEF35A5YM69 484 aa9□□□□□ -0.97
VPS53-214ENST00000572607 C5orf67F2Z3F1 127 aa9□□□□□ -0.97
VPS53-214ENST00000572607 USO1O60763 962 aaKnown RBP9□□□□□ -0.97
VPS53-214ENST00000572607 ERLIN2O94905 339 aa9□□□□□ -0.97
VPS53-214ENST00000572607 MUTP22033 750 aa9□□□□□ -0.97
VPS53-214ENST00000572607 FGFR4P22455 802 aa9□□□□□ -0.97
VPS53-214ENST00000572607 CCT6AP40227 531 aaKnown RBP9□□□□□ -0.97
VPS53-214ENST00000572607 RARRES1P49788 294 aa9□□□□□ -0.97
VPS53-214ENST00000572607 RAB27AP51159 221 aa9□□□□□ -0.97
VPS53-214ENST00000572607 LAMTOR4Q0VGL1 99 aa9□□□□□ -0.97
VPS53-214ENST00000572607 DSC3Q14574 896 aa9□□□□□ -0.97
VPS53-214ENST00000572607 PCBP1Q15365 356 aaKnown RBP eCLIP9□□□□□ -0.97
VPS53-214ENST00000572607 CSPP1Q1MSJ5 1256 aa9□□□□□ -0.97
VPS53-214ENST00000572607 NAALADL2Q58DX5 795 aa9□□□□□ -0.97
VPS53-214ENST00000572607 KRT79Q5XKE5 535 aa9□□□□□ -0.97
VPS53-214ENST00000572607 BLOC1S3Q6QNY0 202 aa9□□□□□ -0.97
VPS53-214ENST00000572607 DTHD1Q6ZMT9 781 aa9□□□□□ -0.97
VPS53-214ENST00000572607 FERMT3Q86UX7 667 aa9□□□□□ -0.97
VPS53-214ENST00000572607 CATSPER3Q86XQ3 398 aa9□□□□□ -0.97
VPS53-214ENST00000572607 KSR1Q8IVT5 923 aa9□□□□□ -0.97
VPS53-214ENST00000572607 LRRC43Q8N309 656 aa9□□□□□ -0.97
VPS53-214ENST00000572607 RNF149Q8NC42 400 aa9□□□□□ -0.97
VPS53-214ENST00000572607 MCPH1Q8NEM0 835 aa9□□□□□ -0.97
VPS53-214ENST00000572607 SNX29Q8TEQ0 813 aa9□□□□□ -0.97
VPS53-214ENST00000572607 PIGOQ8TEQ8 1089 aa9□□□□□ -0.97
VPS53-214ENST00000572607 RSPH1Q8WYR4 309 aa9□□□□□ -0.97
VPS53-214ENST00000572607 CLP1Q92989 425 aaKnown RBP9□□□□□ -0.97
VPS53-214ENST00000572607 PPP2R3CQ969Q6 453 aa9□□□□□ -0.97
VPS53-214ENST00000572607 PGBD4Q96DM1 585 aa9□□□□□ -0.97
VPS53-214ENST00000572607 MRPL38Q96DV4 380 aaKnown RBP9□□□□□ -0.97
VPS53-214ENST00000572607 TMEM117Q9H0C3 514 aa9□□□□□ -0.97
VPS53-214ENST00000572607 PCDHB6Q9Y5E3 794 aa9□□□□□ -0.97
VPS53-214ENST00000572607 PCDHB12Q9Y5F1 795 aa9□□□□□ -0.97
VPS53-214ENST00000572607 ADGRG1Q9Y653 693 aa9□□□□□ -0.97
VPS53-214ENST00000572607 MYH9P35579 1960 aaKnown RBP9□□□□□ -0.97
VPS53-214ENST00000572607 A0A0U1RQF3 1178 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 VPS37CA5D8V6 355 aaPredicted RBP8.99□□□□□ -0.97
VPS53-214ENST00000572607 FAM86C2PA6NEL3 165 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 GPR37L1O60883 481 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 MED24O75448 989 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 CSDE1O75534 798 aaKnown RBP8.99□□□□□ -0.97
VPS53-214ENST00000572607 EOMESO95936 686 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 FGFR1P11362 822 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 LAG3P18627 525 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 RPA1P27694 616 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 PRPHP41219 470 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 GATMP50440 423 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 FAM189BP81408 668 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 PDIA5Q14554 519 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 FAM102BQ5T8I3 360 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 ECHDC2Q86YB7 292 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 ZBTB8OSQ8IWT0 167 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 CRIPAKQ8N1N5 446 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 P2RX5Q93086 422 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 HLA-CQ95604 372 aa8.99□□□□□ -0.97
VPS53-214ENST00000572607 MRPL9Q9BYD2 267 aaKnown RBP8.99□□□□□ -0.97
VPS53-214ENST00000572607 POLR3FQ9H1D9 316 aaPredicted RBP8.99□□□□□ -0.97
VPS53-214ENST00000572607 NSUN3Q9H649 340 aaKnown RBP8.99□□□□□ -0.97
VPS53-214ENST00000572607 DBR1Q9UK59 544 aaKnown RBP8.99□□□□□ -0.97
VPS53-214ENST00000572607 CARNS1A5YM72 827 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 RNF223E7ERA6 249 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 INO80B-WBP1J3KQ70 363 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 ZBTB39O15060 712 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 ACTN4O43707 911 aaKnown RBP8.98□□□□□ -0.97
VPS53-214ENST00000572607 CSPG5O95196 566 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 BMP15O95972 392 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 SPATA31C1P0DKV0 1188 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 AXLP30530 894 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 TOB1P50616 345 aaPredicted RBP8.98□□□□□ -0.97
VPS53-214ENST00000572607 POU5F1BQ06416 359 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 CUL4AQ13619 759 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 TMEM132AQ24JP5 1023 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 GLB1LQ6UWU2 654 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 MAEAQ7L5Y9 396 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 BRAPQ7Z569 592 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 THNSL1Q8IYQ7 743 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 HACE1Q8IYU2 909 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 KLHL23Q8NBE8 558 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 CNNM3Q8NE01 707 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms