RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 TUBGCP5Q96RT8 1024 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 C2orf49Q9BVC5 232 aaPredicted RBP11.62□□□□□ -0.55
CLK3-226ENST00000569406 MRPL46Q9H2W6 279 aaKnown RBP11.62□□□□□ -0.55
CLK3-226ENST00000569406 EHD2Q9NZN4 543 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 LARSQ9P2J5 1176 aaKnown RBP11.62□□□□□ -0.55
CLK3-226ENST00000569406 JAG2Q9Y219 1238 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 GNPATO15228 680 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 IFNAR2P48551 515 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 FXR1P51114 621 aaKnown RBP eCLIP11.62□□□□□ -0.55
CLK3-226ENST00000569406 FMR1Q06787 632 aaKnown RBP eCLIP11.62□□□□□ -0.55
CLK3-226ENST00000569406 ITIH4Q14624 930 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 METTL21CQ5VZV1 264 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 NEPROQ6NW34 567 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 GPIHBP1Q8IV16 184 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 GRAMD1CQ8IYS0 662 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 ASAP3Q8TDY4 903 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 CYP39A1Q9NYL5 469 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 VPS54Q9P1Q0 977 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 NOX1Q9Y5S8 564 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 ANKRD31Q8N7Z5 1873 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 LINC00854A0A1B0GVQ3 168 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 TSPY2A6NKD2 308 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 DCDC2CA8MYV0 355 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 SEMA3EO15041 775 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 MSL3P1P0C860 447 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 TSPY3P0CV98 308 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 TSPY8P0CW00 308 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 MZF1P28698 734 aaPredicted RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 CTNNA1P35221 906 aaKnown RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 ZNF131P52739 623 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 CSE1LP55060 971 aaKnown RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 TSPY1Q01534 308 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 R3HDM1Q15032 1099 aaKnown RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 PAPD7Q5XG87 772 aaKnown RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 CNGA4Q8IV77 575 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 PRPF31Q8WWY3 499 aaKnown RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 NCSTNQ92542 709 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 CCSER1Q9C0I3 900 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 C6orf203Q9P0P8 240 aaPredicted RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 DDHD2O94830 711 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 HSPA1AP0DMV8 641 aaKnown RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 HSPA1BP0DMV9 641 aaKnown RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 PRKG1Q13976 671 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 APTXQ7Z2E3 356 aaKnown RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 CACTIN-AS1Q8N1I8 211 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 NAT14Q8WUY8 206 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 RAB3IPQ96QF0 476 aaPredicted RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 SEZ6LQ9BYH1 1024 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 M0R2N6 131 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 FBP2O00757 339 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 PRPF3O43395 683 aaKnown RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 OPHN1O60890 802 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 PEX11AO75192 247 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 FBXO21O94952 628 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 LDHBP07195 334 aaKnown RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 HOXD10P28358 340 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 DNA2P51530 1060 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 TMTC3Q6ZXV5 915 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 SH3RF1Q7Z6J0 888 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 TRIM22Q8IYM9 498 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 ZNF579Q8NAF0 562 aaKnown RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 LRRC8CQ8TDW0 803 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 ESR2Q92731 530 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 HEPHQ9BQS7 1158 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 GLT8D2Q9H1C3 349 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 RNF41Q9H4P4 317 aaPredicted RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 ARHGEF3Q9NR81 526 aa11.61□□□□□ -0.55
CLK3-226ENST00000569406 SRPRBQ9Y5M8 271 aaKnown RBP11.61□□□□□ -0.55
CLK3-226ENST00000569406 ZNF646O15015 1829 aaPredicted RBP11.6□□□□□ -0.55
CLK3-226ENST00000569406 E7ENQ6 273 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 B3GALNT1O75752 331 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 ZNF18P17022 549 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 CDC25AP30304 524 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 SBK1Q52WX2 424 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 CAVIN4Q5BKX8 364 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 MAMSTRQ6ZN01 415 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 MMGT1Q8N4V1 131 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 TTC39CQ8N584 583 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 SCG3Q8WXD2 468 aaKnown RBP11.6□□□□□ -0.55
CLK3-226ENST00000569406 ERLEC1Q96DZ1 483 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 ZNF333Q96JL9 665 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 CSRNP2Q9H175 543 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 GBA3Q9H227 469 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 SELENONQ9NZV5 590 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 FAF1Q9UNN5 650 aaPredicted RBP11.6□□□□□ -0.55
CLK3-226ENST00000569406 ROBO3Q96MS0 1386 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 SH3BP5O60239 455 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 HEXIM1O94992 359 aaKnown RBP11.6□□□□□ -0.55
CLK3-226ENST00000569406 RASSF7Q02833 373 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 FAM47AQ5JRC9 791 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 AGAP9Q5VTM2 703 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 HAUS3Q68CZ6 603 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 TYW1BQ6NUM6 668 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 TTC8Q8TAM2 541 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 SETDB2Q96T68 719 aa11.6□□□□□ -0.55
CLK3-226ENST00000569406 EPN1Q9Y6I3 576 aaPredicted RBP11.6□□□□□ -0.55
CLK3-226ENST00000569406 POLR2DO15514 142 aaKnown RBP11.59□□□□□ -0.55
CLK3-226ENST00000569406 TBC1D12O60347 775 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 ONECUT3O60422 494 aaPredicted RBP11.59□□□□□ -0.55
CLK3-226ENST00000569406 SERPINB7O75635 380 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms