RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 IQSEC1Q6DN90 963 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 UNQ6494/PRO21346Q6UXR6 183 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 Q6ZRM9 215 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 MRGPRGQ86SM5 289 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 SMC1BQ8NDV3 1235 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 PDCD2LQ9BRP1 358 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 MTFR1LQ9H019 292 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 PIF1Q9H611 641 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 NRDE2Q9H7Z3 1164 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 SLC2A4RGQ9NR83 387 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 H2AFY2Q9P0M6 372 aaPredicted RBP4.14□□□□□ -1.75
VPS35-207ENST00000568191 C11orf21Q9P2W6 132 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 NUMBLQ9Y6R0 609 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 ZNF891A8MT65 544 aaPredicted RBP4.13□□□□□ -1.75
VPS35-207ENST00000568191 HOXA3O43365 443 aaPredicted RBP4.13□□□□□ -1.75
VPS35-207ENST00000568191 FKBP9O95302 570 aa4.13□□□□□ -1.75
VPS35-207ENST00000568191 ADAM8P78325 824 aa4.13□□□□□ -1.75
VPS35-207ENST00000568191 TOB2Q14106 344 aaPredicted RBP4.13□□□□□ -1.75
VPS35-207ENST00000568191 PTPAQ15257 358 aa4.13□□□□□ -1.75
VPS35-207ENST00000568191 DDB1Q16531 1140 aa4.13□□□□□ -1.75
VPS35-207ENST00000568191 SMN1Q16637 294 aaKnown RBP4.13□□□□□ -1.75
VPS35-207ENST00000568191 CRB2Q5IJ48 1285 aa4.13□□□□□ -1.75
VPS35-207ENST00000568191 LY6G5CQ5SRR4 150 aa4.13□□□□□ -1.75
VPS35-207ENST00000568191 FAM180AQ6UWF9 173 aa4.13□□□□□ -1.75
VPS35-207ENST00000568191 FKBP9P1Q75LS8 142 aa4.13□□□□□ -1.75
VPS35-207ENST00000568191 TAS1R1Q7RTX1 841 aa4.13□□□□□ -1.75
VPS35-207ENST00000568191 ZNF276Q8N554 614 aa4.13□□□□□ -1.75
VPS35-207ENST00000568191 USP7Q93009 1102 aa4.13□□□□□ -1.75
VPS35-207ENST00000568191 PGBD4Q96DM1 585 aa4.13□□□□□ -1.75
VPS35-207ENST00000568191 IL17RAQ96F46 866 aa4.13□□□□□ -1.75
VPS35-207ENST00000568191 ZNF496Q96IT1 587 aaPredicted RBP4.13□□□□□ -1.75
VPS35-207ENST00000568191 EIF2B4Q9UI10 523 aaKnown RBP4.13□□□□□ -1.75
VPS35-207ENST00000568191 PRR5-ARHGAP8B1AHC4 643 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 TRIM24O15164 1050 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 DNAJC6O75061 913 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 FAM20BO75063 409 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 RPS6KA4O75676 772 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 RHOBTB3O94955 611 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 CLSTN1O94985 981 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 LY86O95711 162 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 GZMKP49863 264 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 MXRA7P84157 204 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 MEF2AQ02078 507 aaPredicted RBP4.12□□□□□ -1.75
VPS35-207ENST00000568191 CD69Q07108 199 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 PPARAQ07869 468 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 MGAT5Q09328 741 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 PCBP1Q15365 356 aaKnown RBP eCLIP4.12□□□□□ -1.75
VPS35-207ENST00000568191 TKFCQ3LXA3 575 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 GJC2Q5T442 439 aaPredicted RBP4.12□□□□□ -1.75
VPS35-207ENST00000568191 CREB3L3Q68CJ9 461 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 NAIF1Q69YI7 327 aaPredicted RBP4.12□□□□□ -1.75
VPS35-207ENST00000568191 HTR3DQ70Z44 454 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 PDZD4Q76G19 769 aaPredicted RBP4.12□□□□□ -1.75
VPS35-207ENST00000568191 NOP9Q86U38 636 aaKnown RBP4.12□□□□□ -1.75
VPS35-207ENST00000568191 ULK2Q8IYT8 1036 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 OR14C36Q8NHC7 312 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 PPP1R14CQ8TAE6 165 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 CPT1CQ8TCG5 803 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 LEO1Q8WVC0 666 aaPredicted RBP4.12□□□□□ -1.75
VPS35-207ENST00000568191 CDC5LQ99459 802 aaKnown RBP4.12□□□□□ -1.75
VPS35-207ENST00000568191 TARS2Q9BW92 718 aaKnown RBP4.12□□□□□ -1.75
VPS35-207ENST00000568191 ING3Q9NXR8 418 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 SORCS3Q9UPU3 1222 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 MAPRE3Q9UPY8 281 aa4.12□□□□□ -1.75
VPS35-207ENST00000568191 MRPL42Q9Y6G3 142 aaKnown RBP4.12□□□□□ -1.75
VPS35-207ENST00000568191 A0A0A6YYK5 440 aaPredicted RBP4.11□□□□□ -1.75
VPS35-207ENST00000568191 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.11□□□□□ -1.75
VPS35-207ENST00000568191 PRSS38A1L453 326 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 KLRG2A4D1S0 409 aaPredicted RBP4.11□□□□□ -1.75
VPS35-207ENST00000568191 ELL2O00472 640 aaPredicted RBP4.11□□□□□ -1.75
VPS35-207ENST00000568191 TGM5O43548 720 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 KDM1AO60341 852 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 PRAMEF4O60810 478 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 SCAF4O95104 1147 aaKnown RBP4.11□□□□□ -1.75
VPS35-207ENST00000568191 PFKMP08237 780 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 LTA4HP09960 611 aaKnown RBP4.11□□□□□ -1.75
VPS35-207ENST00000568191 MYCLP1P12525 358 aaPredicted RBP4.11□□□□□ -1.75
VPS35-207ENST00000568191 HK1P19367 917 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 MGAT1P26572 445 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 RABGGTBP53611 331 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 MRPL49Q13405 166 aaKnown RBP4.11□□□□□ -1.75
VPS35-207ENST00000568191 TERF2Q15554 542 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 ATP13A4Q4VNC1 1196 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 TIGD2Q4W5G0 525 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 FNDC7Q5VTL7 733 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 IGFL4Q6B9Z1 124 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 LAIR1Q6GTX8 287 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 DDX46Q7L014 1031 aaKnown RBP4.11□□□□□ -1.75
VPS35-207ENST00000568191 RASSF3Q86WH2 238 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 CXorf67Q86X51 503 aaPredicted RBP4.11□□□□□ -1.75
VPS35-207ENST00000568191 LARP4BQ92615 738 aaKnown RBP4.11□□□□□ -1.75
VPS35-207ENST00000568191 SLC5A5Q92911 643 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 LENG9Q96B70 501 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 DCLRE1CQ96SD1 692 aaKnown RBP4.11□□□□□ -1.75
VPS35-207ENST00000568191 SOX7Q9BT81 388 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 ANO3Q9BYT9 981 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 IKZF4Q9H2S9 585 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 SPTLC3Q9NUV7 552 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 FZD1Q9UP38 647 aa4.11□□□□□ -1.75
VPS35-207ENST00000568191 OVOL3O00110 214 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms