RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 ADAMTS5Q9UNA0 930 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 COQ4Q9Y3A0 265 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 PCDHA10Q9Y5I2 948 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 DOCK1Q14185 1865 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 GOLGA6L10A0A0M3HER8 536 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 GOLGA6CA6NDK9 693 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 FAM187AA6NFU0 413 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 TMCO5BA8MYB1 307 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 NFKBIEO00221 500 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 FOXN3O00409 490 aaPredicted RBP6.76□□□□□ -1.33
CLN3-223ENST00000566472 DDX3YO15523 660 aaKnown RBP6.76□□□□□ -1.33
CLN3-223ENST00000566472 BUB1BO60566 1050 aaPredicted RBP6.76□□□□□ -1.33
CLN3-223ENST00000566472 RTN2O75298 545 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 DGAT1O75907 488 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 CCNE2O96020 404 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 GLI1P08151 1106 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 NR3C2P08235 984 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 GOLGA6DP0CG33 693 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 MYCLP12524 364 aaPredicted RBP6.76□□□□□ -1.33
CLN3-223ENST00000566472 KCNA2P16389 499 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 ICAM3P32942 547 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 GPC3P51654 580 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 PEX3P56589 373 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 SKOR1P84550 965 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 SLC7A5Q01650 507 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 PPP3CAQ08209 521 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 SPP2Q13103 211 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 MTMR3Q13615 1198 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 PLS1Q14651 629 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 ZSCAN26Q16670 478 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 UGCGQ16739 394 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 GNPTABQ3T906 1256 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 C1orf220Q5T0J3 134 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 CFAP58Q5T655 872 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 EMC10Q5UCC4 262 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 KRT39Q6A163 491 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 PHLDB3Q6NSJ2 640 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 SAMD1Q6SPF0 538 aaPredicted RBP6.76□□□□□ -1.33
CLN3-223ENST00000566472 KSR1Q8IVT5 923 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 ARHGEF19Q8IW93 802 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 MICALL2Q8IY33 904 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 FAM71AQ8IYT1 594 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 TSEN2Q8NCE0 465 aaKnown RBP6.76□□□□□ -1.33
CLN3-223ENST00000566472 TMEM161BQ8NDZ6 487 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 SLC35G2Q8TBE7 412 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 NSUN6Q8TEA1 469 aaKnown RBP6.76□□□□□ -1.33
CLN3-223ENST00000566472 SEC14L1Q92503 715 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 SHC3Q92529 594 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 ATG4CQ96DT6 458 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 MFSD14AQ96MC6 490 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 RUNDC3BQ96NL0 473 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 RPS6KC1Q96S38 1066 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 CBWD1Q9BRT8 395 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 TEX13BQ9BXU2 312 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 TMEM117Q9H0C3 514 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 RAB17Q9H0T7 212 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 IKZF4Q9H2S9 585 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 EPB41L5Q9HCM4 733 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 POLD4Q9HCU8 107 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 PICK1Q9NRD5 415 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 GOLGA6AQ9NYA3 693 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 PKD2L1Q9P0L9 805 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 PACSIN2Q9UNF0 486 aaPredicted RBP6.76□□□□□ -1.33
CLN3-223ENST00000566472 PPME1Q9Y570 386 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 FER1L6Q2WGJ9 1857 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 SYNGAP1Q96PV0 1343 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 IGSF9BQ9UPX0 1349 aa6.76□□□□□ -1.33
CLN3-223ENST00000566472 TESPA1A2RU30 521 aaPredicted RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 SRRM3A6NNA2 597 aaPredicted RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 HMGB1P1B2RPK0 211 aaPredicted RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 FZD9O00144 591 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 KRIT1O00522 736 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 SLC16A4O15374 487 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 ATP9AO75110 1047 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 STBD1O95210 358 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 PIGRP01833 764 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 ADRB2P07550 413 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 PTPRAP18433 802 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 CTNNA2P26232 953 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 NPTX2P47972 431 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 GCLMP48507 274 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 CARSP49589 748 aaKnown RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 GMPSP49915 693 aaPredicted RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 DNA2P51530 1060 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 GYS2P54840 703 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 HNRNPH2P55795 449 aaKnown RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 PTENP60484 403 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 ERVK-9P63128 1117 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 GPC5P78333 572 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 DLG4P78352 724 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 GCNT1Q02742 428 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 BAATQ14032 418 aaPredicted RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 DHX34Q14147 1143 aaKnown RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 SNRNP35Q16560 246 aaKnown RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 ARHGAP44Q17R89 818 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 BRDTQ58F21 947 aaPredicted RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 XKR3Q5GH77 459 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 SH3D19Q5HYK7 790 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 FAM102BQ5T8I3 360 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 SNRNP48Q6IEG0 339 aaKnown RBP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms