RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 DHX8Q14562 1220 aaKnown RBP19.1■□□□□ 0.65
CLN3-217ENST00000565354 MXD4Q14582 209 aaPredicted RBP19.1■□□□□ 0.65
CLN3-217ENST00000565354 RRAGBQ5VZM2 374 aa19.1■□□□□ 0.65
CLN3-217ENST00000565354 KCNK18Q7Z418 384 aa19.1■□□□□ 0.65
CLN3-217ENST00000565354 KSR1Q8IVT5 923 aa19.1■□□□□ 0.65
CLN3-217ENST00000565354 PRPF31Q8WWY3 499 aaKnown RBP19.1■□□□□ 0.65
CLN3-217ENST00000565354 SNX27Q96L92 541 aa19.1■□□□□ 0.65
CLN3-217ENST00000565354 FDXACB1Q9BRP7 624 aaPredicted RBP19.1■□□□□ 0.65
CLN3-217ENST00000565354 INO80BQ9C086 356 aaPredicted RBP19.1■□□□□ 0.65
CLN3-217ENST00000565354 TSHZ2Q9NRE2 1034 aa19.1■□□□□ 0.65
CLN3-217ENST00000565354 RCOR1Q9UKL0 485 aa19.1■□□□□ 0.65
CLN3-217ENST00000565354 CACNA1HO95180 2353 aa19.1■□□□□ 0.65
CLN3-217ENST00000565354 TBX10O75333 385 aa19.09■□□□□ 0.65
CLN3-217ENST00000565354 LAMTOR4Q0VGL1 99 aa19.09■□□□□ 0.65
CLN3-217ENST00000565354 CCDC73Q6ZRK6 1079 aa19.09■□□□□ 0.65
CLN3-217ENST00000565354 USP49Q70CQ1 688 aa19.09■□□□□ 0.65
CLN3-217ENST00000565354 LEO1Q8WVC0 666 aaPredicted RBP19.09■□□□□ 0.65
CLN3-217ENST00000565354 EDAQ92838 391 aa19.09■□□□□ 0.65
CLN3-217ENST00000565354 CLP1Q92989 425 aaKnown RBP19.09■□□□□ 0.65
CLN3-217ENST00000565354 ADAMTS10Q9H324 1103 aa19.09■□□□□ 0.65
CLN3-217ENST00000565354 RC3H2Q9HBD1 1191 aaKnown RBP19.09■□□□□ 0.65
CLN3-217ENST00000565354 FAM13BQ9NYF5 915 aa19.09■□□□□ 0.65
CLN3-217ENST00000565354 PADI3Q9ULW8 664 aa19.09■□□□□ 0.65
CLN3-217ENST00000565354 PCDHA7Q9UN72 937 aa19.09■□□□□ 0.65
CLN3-217ENST00000565354 NOC2LQ9Y3T9 749 aaKnown RBP19.09■□□□□ 0.65
CLN3-217ENST00000565354 ADGRA3Q8IWK6 1321 aa19.08■□□□□ 0.65
CLN3-217ENST00000565354 EIF4BP23588 611 aaKnown RBP19.08■□□□□ 0.64
CLN3-217ENST00000565354 STAT6P42226 847 aa19.08■□□□□ 0.64
CLN3-217ENST00000565354 PHKA2P46019 1235 aa19.08■□□□□ 0.64
CLN3-217ENST00000565354 SYT2Q8N9I0 419 aaPredicted RBP19.08■□□□□ 0.64
CLN3-217ENST00000565354 RNF149Q8NC42 400 aa19.08■□□□□ 0.64
CLN3-217ENST00000565354 RAD54LQ92698 747 aa19.08■□□□□ 0.64
CLN3-217ENST00000565354 CHAMP1Q96JM3 812 aa19.08■□□□□ 0.64
CLN3-217ENST00000565354 IFT74Q96LB3 600 aa19.08■□□□□ 0.64
CLN3-217ENST00000565354 PHOX2BQ99453 314 aa19.08■□□□□ 0.64
CLN3-217ENST00000565354 FTHL17Q9BXU8 183 aa19.08■□□□□ 0.64
CLN3-217ENST00000565354 PANK2Q9BZ23 570 aa19.08■□□□□ 0.64
CLN3-217ENST00000565354 AGO3Q9H9G7 860 aaKnown RBP19.08■□□□□ 0.64
CLN3-217ENST00000565354 GPRC5CQ9NQ84 441 aa19.08■□□□□ 0.64
CLN3-217ENST00000565354 CHMP5Q9NZZ3 219 aa19.08■□□□□ 0.64
CLN3-217ENST00000565354 STK17AQ9UEE5 414 aa19.08■□□□□ 0.64
CLN3-217ENST00000565354 CD207Q9UJ71 328 aa19.08■□□□□ 0.64
CLN3-217ENST00000565354 KRT18P05783 430 aaKnown RBP19.07■□□□□ 0.64
CLN3-217ENST00000565354 DARSP14868 501 aaKnown RBP19.07■□□□□ 0.64
CLN3-217ENST00000565354 SFPQP23246 707 aaKnown RBP eCLIP19.07■□□□□ 0.64
CLN3-217ENST00000565354 GTF2F1P35269 517 aaKnown RBP eCLIP19.07■□□□□ 0.64
CLN3-217ENST00000565354 ARL2P36404 184 aa19.07■□□□□ 0.64
CLN3-217ENST00000565354 MCM6Q14566 821 aa19.07■□□□□ 0.64
CLN3-217ENST00000565354 TPRNQ4KMQ1 711 aa19.07■□□□□ 0.64
CLN3-217ENST00000565354 RINT1Q6NUQ1 792 aa19.07■□□□□ 0.64
CLN3-217ENST00000565354 BMP8AQ7Z5Y6 402 aa19.07■□□□□ 0.64
CLN3-217ENST00000565354 FAM228AQ86W67 206 aa19.07■□□□□ 0.64
CLN3-217ENST00000565354 PDILTQ8N807 584 aa19.07■□□□□ 0.64
CLN3-217ENST00000565354 PRSS33Q8NF86 280 aa19.07■□□□□ 0.64
CLN3-217ENST00000565354 ASAP3Q8TDY4 903 aa19.07■□□□□ 0.64
CLN3-217ENST00000565354 TMEM40Q8WWA1 233 aa19.07■□□□□ 0.64
CLN3-217ENST00000565354 LARP4BQ92615 738 aaKnown RBP19.07■□□□□ 0.64
CLN3-217ENST00000565354 KIFAP3Q92845 792 aa19.07■□□□□ 0.64
CLN3-217ENST00000565354 IGFLR1Q9H665 355 aa19.07■□□□□ 0.64
CLN3-217ENST00000565354 ST3GAL5Q9UNP4 418 aa19.07■□□□□ 0.64
CLN3-217ENST00000565354 KIAA1671Q9BY89 1806 aa19.07■□□□□ 0.64
CLN3-217ENST00000565354 CFAP54Q96N23 3096 aa19.06■□□□□ 0.64
CLN3-217ENST00000565354 LRRIQ4A6NIV6 560 aa19.06■□□□□ 0.64
CLN3-217ENST00000565354 LINC01565O15544 149 aa19.06■□□□□ 0.64
CLN3-217ENST00000565354 GLRA2P23416 452 aa19.06■□□□□ 0.64
CLN3-217ENST00000565354 ADAM15Q13444 863 aa19.06■□□□□ 0.64
CLN3-217ENST00000565354 PPP2R5AQ15172 486 aa19.06■□□□□ 0.64
CLN3-217ENST00000565354 CATSPER4Q7RTX7 472 aa19.06■□□□□ 0.64
CLN3-217ENST00000565354 SRGAP1Q7Z6B7 1085 aa19.06■□□□□ 0.64
CLN3-217ENST00000565354 GPBP1Q86WP2 473 aa19.06■□□□□ 0.64
CLN3-217ENST00000565354 DRC1Q96MC2 740 aa19.06■□□□□ 0.64
CLN3-217ENST00000565354 RUSC1Q9BVN2 902 aa19.06■□□□□ 0.64
CLN3-217ENST00000565354 TIPINQ9BVW5 301 aa19.06■□□□□ 0.64
CLN3-217ENST00000565354 PLVAPQ9BX97 442 aa19.06■□□□□ 0.64
CLN3-217ENST00000565354 ERVK-5Q9HDB9 667 aa19.06■□□□□ 0.64
CLN3-217ENST00000565354 KCND2Q9NZV8 630 aa19.06■□□□□ 0.64
CLN3-217ENST00000565354 DENND3A2RUS2 1198 aa19.05■□□□□ 0.64
CLN3-217ENST00000565354 HIP1RO75146 1068 aa19.05■□□□□ 0.64
CLN3-217ENST00000565354 CSDE1O75534 798 aaKnown RBP19.05■□□□□ 0.64
CLN3-217ENST00000565354 ZSCAN20P17040 1043 aaPredicted RBP19.05■□□□□ 0.64
CLN3-217ENST00000565354 IBSPP21815 317 aaPredicted RBP19.05■□□□□ 0.64
CLN3-217ENST00000565354 FGFR4P22455 802 aa19.05■□□□□ 0.64
CLN3-217ENST00000565354 PTPN5P54829 565 aa19.05■□□□□ 0.64
CLN3-217ENST00000565354 SLC12A3P55017 1021 aa19.05■□□□□ 0.64
CLN3-217ENST00000565354 RAD51AP2Q09MP3 1159 aa19.05■□□□□ 0.64
CLN3-217ENST00000565354 CAPSQ13938 189 aa19.05■□□□□ 0.64
CLN3-217ENST00000565354 BTG3Q14201 252 aaPredicted RBP19.05■□□□□ 0.64
CLN3-217ENST00000565354 AXDND1Q5T1B0 1012 aaPredicted RBP19.05■□□□□ 0.64
CLN3-217ENST00000565354 SHC4Q6S5L8 630 aa19.05■□□□□ 0.64
CLN3-217ENST00000565354 ZBTB8OSQ8IWT0 167 aa19.05■□□□□ 0.64
CLN3-217ENST00000565354 DEPTORQ8TB45 409 aa19.05■□□□□ 0.64
CLN3-217ENST00000565354 ZNF689Q96CS4 500 aaPredicted RBP19.05■□□□□ 0.64
CLN3-217ENST00000565354 MSLNLQ96KJ4 702 aa19.05■□□□□ 0.64
CLN3-217ENST00000565354 IPO9Q96P70 1041 aaKnown RBP19.05■□□□□ 0.64
CLN3-217ENST00000565354 GDPD2Q9HCC8 539 aa19.05■□□□□ 0.64
CLN3-217ENST00000565354 POLD4Q9HCU8 107 aa19.05■□□□□ 0.64
CLN3-217ENST00000565354 BLOC1S4Q9NUP1 217 aa19.05■□□□□ 0.64
CLN3-217ENST00000565354 ZFHX2Q9C0A1 2572 aaPredicted RBP19.05■□□□□ 0.64
CLN3-217ENST00000565354 KMT2EQ8IZD2 1858 aa19.05■□□□□ 0.64
CLN3-217ENST00000565354 GOLGA6L4A6NEF3 574 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms