RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TCF25Q9BQ70 676 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 UBN1Q9NPG3 1134 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 LRWD1Q9UFC0 647 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 PRKAG3Q9UGI9 489 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 PCDHGC5Q9Y5F6 944 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 ARHGEF35A5YM69 484 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 H3BQV1 296 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 LAD1O00515 517 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 PER2O15055 1255 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 MBTPS2O43462 519 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 TBX10O75333 385 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 ITGA4P13612 1032 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 CCT6AP40227 531 aaKnown RBP18.69■□□□□ 0.58
CLK3-210ENST00000563112 PTGDRQ13258 359 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 SMAD4Q13485 552 aaKnown RBP18.69■□□□□ 0.58
CLK3-210ENST00000563112 PDIA5Q14554 519 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 NBR1Q14596 966 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 UBXN11Q5T124 520 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 POTEGQ6S5H5 508 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 MAEAQ7L5Y9 396 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 C4orf32Q8N8J7 132 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 C1QTNF1Q9BXJ1 281 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 NFKBIZQ9BYH8 718 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 RSAD1Q9HA92 442 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 TBC1D13Q9NVG8 400 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 KANSL3Q9P2N6 904 aa18.69■□□□□ 0.58
CLK3-210ENST00000563112 MEIS3P2A8K0S8 358 aa18.68■□□□□ 0.58
CLK3-210ENST00000563112 NT5C1B-RDH14C9J2C7 533 aa18.68■□□□□ 0.58
CLK3-210ENST00000563112 TSPAN1O60635 241 aa18.68■□□□□ 0.58
CLK3-210ENST00000563112 NCLP19338 710 aaKnown RBP18.68■□□□□ 0.58
CLK3-210ENST00000563112 GJB2P29033 226 aa18.68■□□□□ 0.58
CLK3-210ENST00000563112 MBTD1Q05BQ5 628 aa18.68■□□□□ 0.58
CLK3-210ENST00000563112 SMAD2Q15796 467 aaKnown RBP18.68■□□□□ 0.58
CLK3-210ENST00000563112 DUSP6Q16828 381 aa18.68■□□□□ 0.58
CLK3-210ENST00000563112 PADI6Q6TGC4 694 aa18.68■□□□□ 0.58
CLK3-210ENST00000563112 AGMOQ6ZNB7 445 aa18.68■□□□□ 0.58
CLK3-210ENST00000563112 HACE1Q8IYU2 909 aa18.68■□□□□ 0.58
CLK3-210ENST00000563112 TBC1D32Q96NH3 1257 aa18.68■□□□□ 0.58
CLK3-210ENST00000563112 FAM193BQ96PV7 902 aaPredicted RBP18.68■□□□□ 0.58
CLK3-210ENST00000563112 GBP3Q9H0R5 595 aa18.68■□□□□ 0.58
CLK3-210ENST00000563112 NRDE2Q9H7Z3 1164 aa18.68■□□□□ 0.58
CLK3-210ENST00000563112 SMC3Q9UQE7 1217 aa18.68■□□□□ 0.58
CLK3-210ENST00000563112 PCDHB6Q9Y5E3 794 aa18.68■□□□□ 0.58
CLK3-210ENST00000563112 LRRIQ4A6NIV6 560 aa18.67■□□□□ 0.58
CLK3-210ENST00000563112 TOB1P50616 345 aaPredicted RBP18.67■□□□□ 0.58
CLK3-210ENST00000563112 SMC1AQ14683 1233 aaKnown RBP18.67■□□□□ 0.58
CLK3-210ENST00000563112 RILPL1Q5EBL4 403 aa18.67■□□□□ 0.58
CLK3-210ENST00000563112 ZBTB8OSQ8IWT0 167 aa18.67■□□□□ 0.58
CLK3-210ENST00000563112 CPB2Q96IY4 423 aa18.67■□□□□ 0.58
CLK3-210ENST00000563112 MSLNLQ96KJ4 702 aa18.67■□□□□ 0.58
CLK3-210ENST00000563112 POP1Q99575 1024 aaKnown RBP18.67■□□□□ 0.58
CLK3-210ENST00000563112 TRIM6Q9C030 488 aaPredicted RBP18.67■□□□□ 0.58
CLK3-210ENST00000563112 CSRNP2Q9H175 543 aa18.67■□□□□ 0.58
CLK3-210ENST00000563112 GPRC5CQ9NQ84 441 aa18.67■□□□□ 0.58
CLK3-210ENST00000563112 CLEC1BQ9P126 229 aa18.67■□□□□ 0.58
CLK3-210ENST00000563112 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.67■□□□□ 0.58
CLK3-210ENST00000563112 EYA4O95677 639 aa18.66■□□□□ 0.58
CLK3-210ENST00000563112 GALTP07902 379 aa18.66■□□□□ 0.58
CLK3-210ENST00000563112 ARF4P18085 180 aaPredicted RBP18.66■□□□□ 0.58
CLK3-210ENST00000563112 CYP11B2P19099 503 aa18.66■□□□□ 0.58
CLK3-210ENST00000563112 CA8P35219 290 aa18.66■□□□□ 0.58
CLK3-210ENST00000563112 COASYQ13057 564 aa18.66■□□□□ 0.58
CLK3-210ENST00000563112 DTHD1Q6ZMT9 781 aa18.66■□□□□ 0.58
CLK3-210ENST00000563112 ADHFE1Q8IWW8 467 aa18.66■□□□□ 0.58
CLK3-210ENST00000563112 TMEM87AQ8NBN3 555 aa18.66■□□□□ 0.58
CLK3-210ENST00000563112 SMG8Q8ND04 991 aaKnown RBP18.66■□□□□ 0.58
CLK3-210ENST00000563112 SNX29Q8TEQ0 813 aa18.66■□□□□ 0.58
CLK3-210ENST00000563112 C2orf40Q9H1Z8 148 aa18.66■□□□□ 0.58
CLK3-210ENST00000563112 CD320Q9NPF0 282 aa18.66■□□□□ 0.58
CLK3-210ENST00000563112 PRMT7Q9NVM4 692 aaPredicted RBP18.66■□□□□ 0.58
CLK3-210ENST00000563112 BARX2Q9UMQ3 279 aaPredicted RBP18.66■□□□□ 0.58
CLK3-210ENST00000563112 KIAA1024Q9UPX6 916 aa18.66■□□□□ 0.58
CLK3-210ENST00000563112 IPPQ9Y573 584 aa18.66■□□□□ 0.58
CLK3-210ENST00000563112 MUC3AQ02505 3323 aa18.66■□□□□ 0.58
CLK3-210ENST00000563112 HIDE1A8MVS5 230 aa18.65■□□□□ 0.58
CLK3-210ENST00000563112 CD2BP2O95400 341 aaKnown RBP18.65■□□□□ 0.58
CLK3-210ENST00000563112 GLP2RO95838 553 aa18.65■□□□□ 0.58
CLK3-210ENST00000563112 ALDH2P05091 517 aa18.65■□□□□ 0.58
CLK3-210ENST00000563112 PRPHP41219 470 aa18.65■□□□□ 0.58
CLK3-210ENST00000563112 ZP2Q05996 745 aa18.65■□□□□ 0.58
CLK3-210ENST00000563112 PPP2R5AQ15172 486 aa18.65■□□□□ 0.58
CLK3-210ENST00000563112 AMHR2Q16671 573 aa18.65■□□□□ 0.58
CLK3-210ENST00000563112 KRT79Q5XKE5 535 aa18.65■□□□□ 0.58
CLK3-210ENST00000563112 DDX53Q86TM3 631 aaKnown RBP18.65■□□□□ 0.58
CLK3-210ENST00000563112 VPS52Q8N1B4 723 aa18.65■□□□□ 0.58
CLK3-210ENST00000563112 MRPL43Q8N983 215 aaKnown RBP18.65■□□□□ 0.58
CLK3-210ENST00000563112 IGSF22Q8N9C0 903 aa18.65■□□□□ 0.58
CLK3-210ENST00000563112 IGSF21Q96ID5 467 aa18.65■□□□□ 0.58
CLK3-210ENST00000563112 PRIMPOLQ96LW4 560 aa18.65■□□□□ 0.58
CLK3-210ENST00000563112 TMEM175Q9BSA9 504 aa18.65■□□□□ 0.58
CLK3-210ENST00000563112 EIF2AQ9BY44 585 aaKnown RBP18.65■□□□□ 0.58
CLK3-210ENST00000563112 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.65■□□□□ 0.58
CLK3-210ENST00000563112 STK39Q9UEW8 545 aa18.65■□□□□ 0.58
CLK3-210ENST00000563112 CXCL14O95715 111 aa18.64■□□□□ 0.57
CLK3-210ENST00000563112 SLC11A1P49279 550 aa18.64■□□□□ 0.57
CLK3-210ENST00000563112 GIT2Q14161 759 aa18.64■□□□□ 0.57
CLK3-210ENST00000563112 TMEM132AQ24JP5 1023 aa18.64■□□□□ 0.57
CLK3-210ENST00000563112 SLC27A1Q6PCB7 646 aa18.64■□□□□ 0.57
CLK3-210ENST00000563112 ZNF280BQ86YH2 543 aa18.64■□□□□ 0.57
CLK3-210ENST00000563112 SMRP1Q8NCR6 262 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms