RNA–Protein interactions for RNA: ENST00000562668.1

SMG1-206, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 3

Gene SMG1, Length 449 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-206ENST00000562668 CD163L1Q9NR16 1453 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 CCDC163A0A0D9SF12 145 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 TCRBV16S1A1N1A0A5B0 115 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 PRAMEF22A3QJZ6 481 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 KCNQ2O43526 872 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 MAFO75444 373 aaPredicted RBP6.3□□□□□ -1.4
SMG1-206ENST00000562668 NPTXRO95502 500 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 ACO1P21399 889 aaKnown RBP6.3□□□□□ -1.4
SMG1-206ENST00000562668 RPS19P39019 145 aaKnown RBP6.3□□□□□ -1.4
SMG1-206ENST00000562668 MRE11P49959 708 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 MOGSQ13724 837 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 TMEM177Q53S58 311 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 C2orf27AQ580R0 203 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 GRAMD4Q6IC98 578 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 ZFPM1Q8IX07 1006 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 CDK19Q9BWU1 502 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 PTCH2Q9Y6C5 1203 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 NRKQ7Z2Y5 1582 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 MON2Q7Z3U7 1717 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 SHPRHQ149N8 1683 aa6.3□□□□□ -1.4
SMG1-206ENST00000562668 COL22A1Q8NFW1 1626 aaPredicted RBP6.29□□□□□ -1.4
SMG1-206ENST00000562668 HSPA1LP34931 641 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 HMGA2P52926 109 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 IRF9Q00978 393 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 NRN1LQ496H8 165 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 MIIPQ5JXC2 388 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 CATSPEREQ5SY80 951 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 SOGA3Q5TF21 947 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 ABHD17CQ6PCB6 329 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 Q6ZSN1 163 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 SSH2Q76I76 1423 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 FGD2Q7Z6J4 655 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 IGSF22Q8N9C0 903 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 CALML6Q8TD86 181 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 DDX17Q92841 729 aaKnown RBP6.29□□□□□ -1.4
SMG1-206ENST00000562668 FAM89AQ96GI7 184 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 ZNF341Q9BYN7 854 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 TRIM39Q9HCM9 518 aa6.29□□□□□ -1.4
SMG1-206ENST00000562668 MARF1Q9Y4F3 1742 aaKnown RBP6.29□□□□□ -1.4
SMG1-206ENST00000562668 POLR3AO14802 1390 aaPredicted RBP6.29□□□□□ -1.4
SMG1-206ENST00000562668 ABCA3Q99758 1704 aa6.28□□□□□ -1.4
SMG1-206ENST00000562668 HSPA5P11021 654 aaKnown RBP6.28□□□□□ -1.4
SMG1-206ENST00000562668 STAT5BP51692 787 aa6.28□□□□□ -1.4
SMG1-206ENST00000562668 FOXE3Q13461 319 aa6.28□□□□□ -1.4
SMG1-206ENST00000562668 TMEM132BQ14DG7 1078 aa6.28□□□□□ -1.4
SMG1-206ENST00000562668 SF3A1Q15459 793 aaKnown RBP6.28□□□□□ -1.4
SMG1-206ENST00000562668 USP39Q53GS9 565 aaKnown RBP6.28□□□□□ -1.4
SMG1-206ENST00000562668 MAMDC4Q6UXC1 1216 aa6.28□□□□□ -1.4
SMG1-206ENST00000562668 C2orf69Q8N8R5 385 aa6.28□□□□□ -1.4
SMG1-206ENST00000562668 OR14K1Q8NGZ2 314 aa6.28□□□□□ -1.4
SMG1-206ENST00000562668 PUS7Q96PZ0 661 aaKnown RBP6.28□□□□□ -1.4
SMG1-206ENST00000562668 MRIQ9BWK5 157 aa6.28□□□□□ -1.4
SMG1-206ENST00000562668 BOCQ9BWV1 1114 aa6.28□□□□□ -1.4
SMG1-206ENST00000562668 PCED1AQ9H1Q7 454 aa6.28□□□□□ -1.4
SMG1-206ENST00000562668 NCOA5Q9HCD5 579 aaKnown RBP6.28□□□□□ -1.4
SMG1-206ENST00000562668 HS3ST3A1Q9Y663 406 aa6.28□□□□□ -1.4
SMG1-206ENST00000562668 USP54Q70EL1 1684 aa6.27□□□□□ -1.41
SMG1-206ENST00000562668 CPSF1Q10570 1443 aaKnown RBP6.27□□□□□ -1.41
SMG1-206ENST00000562668 PPIP5K1Q6PFW1 1433 aa6.27□□□□□ -1.41
SMG1-206ENST00000562668 GOLGA6L22H0YM25 854 aa6.27□□□□□ -1.41
SMG1-206ENST00000562668 APEX1P27695 318 aaKnown RBP6.27□□□□□ -1.41
SMG1-206ENST00000562668 HGFACQ04756 655 aa6.27□□□□□ -1.41
SMG1-206ENST00000562668 MAP3K12Q12852 859 aa6.27□□□□□ -1.41
SMG1-206ENST00000562668 OTOP1Q7RTM1 612 aa6.27□□□□□ -1.41
SMG1-206ENST00000562668 ZNF808Q8N4W9 903 aaPredicted RBP6.27□□□□□ -1.41
SMG1-206ENST00000562668 PMFBP1Q8TBY8 1022 aa6.27□□□□□ -1.41
SMG1-206ENST00000562668 FAM184BQ9ULE4 1060 aa6.27□□□□□ -1.41
SMG1-206ENST00000562668 PIK3C2AO00443 1686 aa6.26□□□□□ -1.41
SMG1-206ENST00000562668 EVC2Q86UK5 1308 aa6.26□□□□□ -1.41
SMG1-206ENST00000562668 SUV39H1O43463 412 aa6.26□□□□□ -1.41
SMG1-206ENST00000562668 SLC26A4O43511 780 aa6.26□□□□□ -1.41
SMG1-206ENST00000562668 ACRV1P26436 265 aa6.26□□□□□ -1.41
SMG1-206ENST00000562668 MSX2P35548 267 aaPredicted RBP6.26□□□□□ -1.41
SMG1-206ENST00000562668 ALDH6A1Q02252 535 aaKnown RBP6.26□□□□□ -1.41
SMG1-206ENST00000562668 KLF10Q13118 480 aa6.26□□□□□ -1.41
SMG1-206ENST00000562668 RTN4RL1Q86UN2 441 aaPredicted RBP6.26□□□□□ -1.41
SMG1-206ENST00000562668 ERCC4Q92889 916 aaPredicted RBP6.26□□□□□ -1.41
SMG1-206ENST00000562668 ZNF503Q96F45 646 aa6.26□□□□□ -1.41
SMG1-206ENST00000562668 FOXB1Q99853 325 aa6.26□□□□□ -1.41
SMG1-206ENST00000562668 NELFAQ9H3P2 528 aa6.26□□□□□ -1.41
SMG1-206ENST00000562668 MED1Q15648 1581 aaPredicted RBP6.26□□□□□ -1.41
SMG1-206ENST00000562668 ACEP12821 1306 aa6.25□□□□□ -1.41
SMG1-206ENST00000562668 LRP6O75581 1613 aa6.25□□□□□ -1.41
SMG1-206ENST00000562668 NPIPB8E9PQR5 432 aa6.25□□□□□ -1.41
SMG1-206ENST00000562668 PLD2O14939 933 aa6.25□□□□□ -1.41
SMG1-206ENST00000562668 MECP2P51608 486 aaKnown RBP6.25□□□□□ -1.41
SMG1-206ENST00000562668 PTH1RQ03431 593 aa6.25□□□□□ -1.41
SMG1-206ENST00000562668 FOXL1Q12952 345 aa6.25□□□□□ -1.41
SMG1-206ENST00000562668 CC2D1AQ6P1N0 951 aaPredicted RBP6.25□□□□□ -1.41
SMG1-206ENST00000562668 GPR135Q8IZ08 494 aa6.25□□□□□ -1.41
SMG1-206ENST00000562668 SHCBP1Q8NEM2 672 aa6.25□□□□□ -1.41
SMG1-206ENST00000562668 EXTL1Q92935 676 aa6.25□□□□□ -1.41
SMG1-206ENST00000562668 FOXRED1Q96CU9 486 aaPredicted RBP6.25□□□□□ -1.41
SMG1-206ENST00000562668 PLA2G3Q9NZ20 509 aa6.25□□□□□ -1.41
SMG1-206ENST00000562668 SBNO1A3KN83 1393 aa6.25□□□□□ -1.41
SMG1-206ENST00000562668 PNPLA6Q8IY17 1366 aa6.25□□□□□ -1.41
SMG1-206ENST00000562668 PHRF1Q9P1Y6 1649 aaKnown RBP6.25□□□□□ -1.41
SMG1-206ENST00000562668 USP6P35125 1406 aa6.25□□□□□ -1.41
SMG1-206ENST00000562668 NPHP3Q7Z494 1330 aa6.25□□□□□ -1.41
SMG1-206ENST00000562668 A0A1W2PP64 1363 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms