RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 RNPEPL1Q9HAU8 725 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 RIC8AQ9NPQ8 531 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 KBTBD4Q9NVX7 518 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 ZNF541Q9H0D2 1346 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 GRID2IPA4D2P6 1211 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 ZBTB5O15062 677 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 DAPK3O43293 454 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 FLOT1O75955 427 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 LCA5LO95447 670 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 CALB2P22676 271 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 GBP1P32455 592 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 TXKP42681 527 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 MTMR3Q13615 1198 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 ENOX2Q16206 610 aaKnown RBP14.32□□□□□ -0.12
CLK3-206ENST00000562078 CALCRLQ16602 461 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 OPTNQ96CV9 577 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 IFT74Q96LB3 600 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 INTS9Q9NV88 658 aaKnown RBP14.32□□□□□ -0.12
CLK3-206ENST00000562078 SMIM23A6NLE4 172 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 WNT10BO00744 389 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 MMP13P45452 471 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 APBB1IPQ7Z5R6 666 aaPredicted RBP14.32□□□□□ -0.12
CLK3-206ENST00000562078 MICALL2Q8IY33 904 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 FITM2Q8N6M3 262 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 AP1M1Q9BXS5 423 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 PHACTR1Q9C0D0 580 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 KANSL2Q9H9L4 492 aa14.32□□□□□ -0.12
CLK3-206ENST00000562078 COL2A1P02458 1487 aaPredicted RBP14.31□□□□□ -0.12
CLK3-206ENST00000562078 ATRNL1Q5VV63 1379 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 PJA2O43164 708 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 EDIL3O43854 480 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 KLRC4O43908 158 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 PEX11AO75192 247 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 OAS1P00973 400 aaKnown RBP14.31□□□□□ -0.12
CLK3-206ENST00000562078 TPBGLP0DKB5 382 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 GM2AP17900 193 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 ORC2Q13416 577 aaPredicted RBP14.31□□□□□ -0.12
CLK3-206ENST00000562078 PPP1R12CQ9BZL4 782 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 RMI1Q9H9A7 625 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 FAM207AQ9NSI2 230 aaPredicted RBP14.31□□□□□ -0.12
CLK3-206ENST00000562078 USP15Q9Y4E8 981 aaPredicted RBP14.31□□□□□ -0.12
CLK3-206ENST00000562078 TLDC2A0PJX2 215 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 H0Y3Z8 333 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 WFS1O76024 890 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 ACADSP16219 412 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 IFI35P80217 286 aaPredicted RBP14.31□□□□□ -0.12
CLK3-206ENST00000562078 KIAA0753Q2KHM9 967 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 SLFN13Q68D06 897 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 TATDN1Q6P1N9 297 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 FAM151AQ8WW52 585 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 DNAJC9Q8WXX5 260 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 TRAPPC9Q96Q05 1148 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 MTMR9Q96QG7 549 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 VCXQ9H320 206 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 NYAP2Q9P242 653 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 CNOT7Q9UIV1 285 aaKnown RBP14.31□□□□□ -0.12
CLK3-206ENST00000562078 TMEM59LQ9UK28 342 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 ATP8A1Q9Y2Q0 1164 aa14.31□□□□□ -0.12
CLK3-206ENST00000562078 GSTT1P30711 240 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 PTDSS1P48651 473 aaKnown RBP14.3□□□□□ -0.12
CLK3-206ENST00000562078 ABCB5Q2M3G0 1257 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 QRICH1Q2TAL8 776 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 MIIPQ5JXC2 388 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 TMEM179Q6ZVK1 233 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 SIAH1Q8IUQ4 282 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 CCNJLQ8IV13 435 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 EIF1ADQ8N9N8 165 aaKnown RBP14.3□□□□□ -0.12
CLK3-206ENST00000562078 STK32AQ8WU08 396 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 DCAF4Q8WV16 495 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 FAM136AQ96C01 138 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 DDX23Q9BUQ8 820 aaKnown RBP14.3□□□□□ -0.12
CLK3-206ENST00000562078 NSRP1Q9H0G5 558 aaKnown RBP14.3□□□□□ -0.12
CLK3-206ENST00000562078 DDX47Q9H0S4 455 aaKnown RBP14.3□□□□□ -0.12
CLK3-206ENST00000562078 CUEDC2Q9H467 287 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 FGFR1OP2Q9NVK5 253 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 ATXN10Q9UBB4 475 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 A0A1W2PQJ5 194 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 POTEMA6NI47 508 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 PSMC4P43686 418 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 CLK2P49760 499 aaKnown RBP14.3□□□□□ -0.12
CLK3-206ENST00000562078 INHBCP55103 352 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 ZNF280AP59817 542 aaPredicted RBP14.3□□□□□ -0.12
CLK3-206ENST00000562078 PTPROQ16827 1216 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 TBC1D10BQ4KMP7 808 aaPredicted RBP14.3□□□□□ -0.12
CLK3-206ENST00000562078 SAMD7Q7Z3H4 446 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 CSGALNACT2Q8N6G5 542 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 MKL1Q969V6 931 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 NOC4LQ9BVI4 516 aaKnown RBP14.3□□□□□ -0.12
CLK3-206ENST00000562078 PSTPIP2Q9H939 334 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 MAGEF1Q9HAY2 307 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 ETNK1Q9HBU6 452 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 DMAP1Q9NPF5 467 aaPredicted RBP14.3□□□□□ -0.12
CLK3-206ENST00000562078 ZNF510Q9Y2H8 683 aa14.3□□□□□ -0.12
CLK3-206ENST00000562078 CNTNAP1P78357 1384 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 LRRC53A6NM62 1247 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 EGFRP00533 1210 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 HNRNPH3P31942 346 aaKnown RBP14.29□□□□□ -0.12
CLK3-206ENST00000562078 MTIF2P46199 727 aaKnown RBP14.29□□□□□ -0.12
CLK3-206ENST00000562078 JAG1P78504 1218 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 MEI1Q5TIA1 1274 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms