RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 ZC3H11AO75152 810 aaKnown RBP eCLIP21.23■□□□□ 0.99
VPS35-202ENST00000561713 EPCAMP16422 314 aa21.23■□□□□ 0.99
VPS35-202ENST00000561713 POLGP54098 1239 aaPredicted RBP21.23■□□□□ 0.99
VPS35-202ENST00000561713 SPIRE1Q08AE8 756 aa21.23■□□□□ 0.99
VPS35-202ENST00000561713 CATSPER4Q7RTX7 472 aa21.23■□□□□ 0.99
VPS35-202ENST00000561713 ZNF410Q86VK4 478 aa21.23■□□□□ 0.99
VPS35-202ENST00000561713 ZBP1Q9H171 429 aa21.23■□□□□ 0.99
VPS35-202ENST00000561713 DACT1Q9NYF0 836 aa21.23■□□□□ 0.99
VPS35-202ENST00000561713 INPP5FQ9Y2H2 1132 aa21.23■□□□□ 0.99
VPS35-202ENST00000561713 COL4A3BPQ9Y5P4 624 aa21.23■□□□□ 0.99
VPS35-202ENST00000561713 PROB1E7EW31 1015 aa21.22■□□□□ 0.99
VPS35-202ENST00000561713 PHKA2P46019 1235 aa21.22■□□□□ 0.99
VPS35-202ENST00000561713 NEK4P51957 841 aa21.22■□□□□ 0.99
VPS35-202ENST00000561713 BMS1Q14692 1282 aaKnown RBP21.22■□□□□ 0.99
VPS35-202ENST00000561713 EMC2Q15006 297 aa21.22■□□□□ 0.99
VPS35-202ENST00000561713 ASCL5Q7RTU5 278 aa21.22■□□□□ 0.99
VPS35-202ENST00000561713 TDRD5Q8NAT2 981 aaKnown RBP21.22■□□□□ 0.99
VPS35-202ENST00000561713 BCL7CQ8WUZ0 217 aaPredicted RBP21.22■□□□□ 0.99
VPS35-202ENST00000561713 WASF1Q92558 559 aa21.22■□□□□ 0.99
VPS35-202ENST00000561713 MINDY3Q9H8M7 445 aa21.22■□□□□ 0.99
VPS35-202ENST00000561713 BRMS1Q9HCU9 246 aa21.22■□□□□ 0.99
VPS35-202ENST00000561713 P4HBP07237 508 aaKnown RBP21.21■□□□□ 0.99
VPS35-202ENST00000561713 YWHABP31946 246 aaKnown RBP21.21■□□□□ 0.99
VPS35-202ENST00000561713 EPHA7Q15375 998 aa21.21■□□□□ 0.99
VPS35-202ENST00000561713 ATAT1Q5SQI0 421 aa21.21■□□□□ 0.99
VPS35-202ENST00000561713 KIAA1841Q6NSI8 718 aa21.21■□□□□ 0.99
VPS35-202ENST00000561713 DIS3L2Q8IYB7 885 aaKnown RBP21.21■□□□□ 0.99
VPS35-202ENST00000561713 ZDHHC14Q8IZN3 488 aa21.21■□□□□ 0.99
VPS35-202ENST00000561713 TMEM87AQ8NBN3 555 aa21.21■□□□□ 0.99
VPS35-202ENST00000561713 SLC7A3Q8WY07 619 aa21.21■□□□□ 0.99
VPS35-202ENST00000561713 IFT122Q9HBG6 1241 aa21.21■□□□□ 0.99
VPS35-202ENST00000561713 CHST12Q9NRB3 414 aa21.21■□□□□ 0.99
VPS35-202ENST00000561713 DZANK1Q9NVP4 752 aa21.21■□□□□ 0.99
VPS35-202ENST00000561713 DBR1Q9UK59 544 aaKnown RBP21.21■□□□□ 0.99
VPS35-202ENST00000561713 SPTBN4Q9H254 2564 aa21.21■□□□□ 0.99
VPS35-202ENST00000561713 BTBD18B2RXH4 712 aa21.2■□□□□ 0.98
VPS35-202ENST00000561713 TBX3O15119 743 aa21.2■□□□□ 0.98
VPS35-202ENST00000561713 B4GALT3O60512 393 aa21.2■□□□□ 0.98
VPS35-202ENST00000561713 SRGAP2CP0DJJ0 459 aa21.2■□□□□ 0.98
VPS35-202ENST00000561713 GUCY1B3Q02153 619 aa21.2■□□□□ 0.98
VPS35-202ENST00000561713 ASTLQ6HA08 431 aaPredicted RBP21.2■□□□□ 0.98
VPS35-202ENST00000561713 TMC5Q6UXY8 1006 aa21.2■□□□□ 0.98
VPS35-202ENST00000561713 DDX53Q86TM3 631 aaKnown RBP21.2■□□□□ 0.98
VPS35-202ENST00000561713 SLC22A17Q8WUG5 538 aa21.2■□□□□ 0.98
VPS35-202ENST00000561713 IGSF21Q96ID5 467 aa21.2■□□□□ 0.98
VPS35-202ENST00000561713 DHX33Q9H6R0 707 aaKnown RBP21.2■□□□□ 0.98
VPS35-202ENST00000561713 FAM105AQ9NUU6 356 aa21.2■□□□□ 0.98
VPS35-202ENST00000561713 TBC1D13Q9NVG8 400 aa21.2■□□□□ 0.98
VPS35-202ENST00000561713 IRAK3Q9Y616 596 aa21.2■□□□□ 0.98
VPS35-202ENST00000561713 DCHS1Q96JQ0 3298 aa21.19■□□□□ 0.98
VPS35-202ENST00000561713 CTSAP10619 480 aa21.19■□□□□ 0.98
VPS35-202ENST00000561713 CALCRLQ16602 461 aa21.19■□□□□ 0.98
VPS35-202ENST00000561713 XKR9Q5GH70 373 aa21.19■□□□□ 0.98
VPS35-202ENST00000561713 PRPF31Q8WWY3 499 aaKnown RBP21.19■□□□□ 0.98
VPS35-202ENST00000561713 PSPC1Q8WXF1 523 aaKnown RBP21.19■□□□□ 0.98
VPS35-202ENST00000561713 NAP1L4Q99733 375 aaKnown RBP21.19■□□□□ 0.98
VPS35-202ENST00000561713 JPH2Q9BR39 696 aaPredicted RBP21.19■□□□□ 0.98
VPS35-202ENST00000561713 TRAIPQ9BWF2 469 aa21.19■□□□□ 0.98
VPS35-202ENST00000561713 GBP3Q9H0R5 595 aa21.19■□□□□ 0.98
VPS35-202ENST00000561713 NRDE2Q9H7Z3 1164 aa21.19■□□□□ 0.98
VPS35-202ENST00000561713 AGPAT5Q9NUQ2 364 aa21.19■□□□□ 0.98
VPS35-202ENST00000561713 DKC1O60832 514 aaKnown RBP eCLIP21.18■□□□□ 0.98
VPS35-202ENST00000561713 GALTP07902 379 aa21.18■□□□□ 0.98
VPS35-202ENST00000561713 RFC5P40937 340 aa21.18■□□□□ 0.98
VPS35-202ENST00000561713 NBL1P41271 181 aa21.18■□□□□ 0.98
VPS35-202ENST00000561713 LAMTOR4Q0VGL1 99 aa21.18■□□□□ 0.98
VPS35-202ENST00000561713 NOMO2Q5JPE7 1267 aa21.18■□□□□ 0.98
VPS35-202ENST00000561713 CABP7Q86V35 215 aa21.18■□□□□ 0.98
VPS35-202ENST00000561713 TPH2Q8IWU9 490 aa21.18■□□□□ 0.98
VPS35-202ENST00000561713 C4orf19Q8IY42 314 aa21.18■□□□□ 0.98
VPS35-202ENST00000561713 PLCD3Q8N3E9 789 aa21.18■□□□□ 0.98
VPS35-202ENST00000561713 VN1R3Q9BXE9 311 aa21.18■□□□□ 0.98
VPS35-202ENST00000561713 MFSD1Q9H3U5 465 aa21.18■□□□□ 0.98
VPS35-202ENST00000561713 XPNPEP1Q9NQW7 623 aa21.18■□□□□ 0.98
VPS35-202ENST00000561713 DNAJB4Q9UDY4 337 aa21.18■□□□□ 0.98
VPS35-202ENST00000561713 USTQ9Y2C2 406 aa21.18■□□□□ 0.98
VPS35-202ENST00000561713 PTPRZ1P23471 2315 aaPredicted RBP21.18■□□□□ 0.98
VPS35-202ENST00000561713 A0A087WWV3 80 aa21.17■□□□□ 0.98
VPS35-202ENST00000561713 PRR23AA6NEV1 266 aa21.17■□□□□ 0.98
VPS35-202ENST00000561713 NEMFO60524 1076 aa21.17■□□□□ 0.98
VPS35-202ENST00000561713 OFD1O75665 1012 aa21.17■□□□□ 0.98
VPS35-202ENST00000561713 ATP2B1P20020 1258 aa21.17■□□□□ 0.98
VPS35-202ENST00000561713 CDC42EP1Q00587 391 aa21.17■□□□□ 0.98
VPS35-202ENST00000561713 GIT2Q14161 759 aa21.17■□□□□ 0.98
VPS35-202ENST00000561713 GLB1LQ6UWU2 654 aa21.17■□□□□ 0.98
VPS35-202ENST00000561713 SLFN12Q8IYM2 578 aa21.17■□□□□ 0.98
VPS35-202ENST00000561713 RNF149Q8NC42 400 aa21.17■□□□□ 0.98
VPS35-202ENST00000561713 EIF2AK1Q9BQI3 630 aaKnown RBP21.17■□□□□ 0.98
VPS35-202ENST00000561713 INO80BQ9C086 356 aaPredicted RBP21.17■□□□□ 0.98
VPS35-202ENST00000561713 ZSWIM4Q9H7M6 989 aa21.17■□□□□ 0.98
VPS35-202ENST00000561713 C2orf16Q68DN1 1984 aa21.17■□□□□ 0.98
VPS35-202ENST00000561713 DENND4AQ7Z401 1863 aa21.16■□□□□ 0.98
VPS35-202ENST00000561713 POTEMA6NI47 508 aa21.16■□□□□ 0.98
VPS35-202ENST00000561713 BAG4O95429 457 aaKnown RBP21.16■□□□□ 0.98
VPS35-202ENST00000561713 SLC11A1P49279 550 aa21.16■□□□□ 0.98
VPS35-202ENST00000561713 CLCN5P51795 746 aa21.16■□□□□ 0.98
VPS35-202ENST00000561713 AFF1P51825 1210 aaKnown RBP21.16■□□□□ 0.98
VPS35-202ENST00000561713 RNASELQ05823 741 aaKnown RBP21.16■□□□□ 0.98
VPS35-202ENST00000561713 TRIM29Q14134 588 aa21.16■□□□□ 0.98
VPS35-202ENST00000561713 PTPN14Q15678 1187 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms