RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 DHX33Q9H6R0 707 aaKnown RBP13.02□□□□□ -0.33
USP3-220ENST00000561381 TBC1D13Q9NVG8 400 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 ORC3Q9UBD5 711 aaPredicted RBP13.02□□□□□ -0.33
USP3-220ENST00000561381 DNAJB4Q9UDY4 337 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 GALTP07902 379 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 WEE2P0C1S8 567 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 SKIP12755 728 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 FDPSP14324 419 aaKnown RBP13.01□□□□□ -0.33
USP3-220ENST00000561381 XBP1P17861 261 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 YWHABP31946 246 aaKnown RBP13.01□□□□□ -0.33
USP3-220ENST00000561381 POLGP54098 1239 aaPredicted RBP13.01□□□□□ -0.33
USP3-220ENST00000561381 NHLH1Q02575 133 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 CYP4A11Q02928 519 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 SPIRE1Q08AE8 756 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 LAMTOR4Q0VGL1 99 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 EPHA7Q15375 998 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 KANK3Q6NY19 840 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 GLB1LQ6UWU2 654 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 AGMOQ6ZNB7 445 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 ALYREFQ86V81 257 aaKnown RBP13.01□□□□□ -0.33
USP3-220ENST00000561381 ZNF280BQ86YH2 543 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 C4orf19Q8IY42 314 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 FEZF2Q8TBJ5 459 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 PSPC1Q8WXF1 523 aaKnown RBP13.01□□□□□ -0.33
USP3-220ENST00000561381 CASP10Q92851 521 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 TMEM169Q96HH4 297 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 IGSF21Q96ID5 467 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 MFSD14AQ96MC6 490 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 JPH2Q9BR39 696 aaPredicted RBP13.01□□□□□ -0.33
USP3-220ENST00000561381 VN1R3Q9BXE9 311 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 GBP3Q9H0R5 595 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 ZBP1Q9H171 429 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 AGPAT5Q9NUQ2 364 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 PCDHB2Q9Y5E7 798 aa13.01□□□□□ -0.33
USP3-220ENST00000561381 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13□□□□□ -0.33
USP3-220ENST00000561381 WNT7AO00755 349 aa13□□□□□ -0.33
USP3-220ENST00000561381 TBX3O15119 743 aa13□□□□□ -0.33
USP3-220ENST00000561381 MARCH6O60337 910 aa13□□□□□ -0.33
USP3-220ENST00000561381 ZNF623O75123 536 aa13□□□□□ -0.33
USP3-220ENST00000561381 HOXB8P17481 243 aaPredicted RBP13□□□□□ -0.33
USP3-220ENST00000561381 HOXA11P31270 313 aaPredicted RBP13□□□□□ -0.33
USP3-220ENST00000561381 RFC5P40937 340 aa13□□□□□ -0.33
USP3-220ENST00000561381 SLC11A1P49279 550 aa13□□□□□ -0.33
USP3-220ENST00000561381 FOSBP53539 338 aa13□□□□□ -0.33
USP3-220ENST00000561381 RNASELQ05823 741 aaKnown RBP13□□□□□ -0.33
USP3-220ENST00000561381 EMC2Q15006 297 aa13□□□□□ -0.33
USP3-220ENST00000561381 ME3Q16798 604 aa13□□□□□ -0.33
USP3-220ENST00000561381 UBXN11Q5T124 520 aa13□□□□□ -0.33
USP3-220ENST00000561381 C12orf76Q8N812 135 aaPredicted RBP13□□□□□ -0.33
USP3-220ENST00000561381 RNF149Q8NC42 400 aa13□□□□□ -0.33
USP3-220ENST00000561381 TNFRSF25Q93038 417 aa13□□□□□ -0.33
USP3-220ENST00000561381 PBXIP1Q96AQ6 731 aa13□□□□□ -0.33
USP3-220ENST00000561381 POMKQ9H5K3 350 aa13□□□□□ -0.33
USP3-220ENST00000561381 WDFY4Q6ZS81 3184 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 DKC1O60832 514 aaKnown RBP eCLIP12.99□□□□□ -0.33
USP3-220ENST00000561381 DDHD2O94830 711 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 CTSAP10619 480 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 EPCAMP16422 314 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 KRT2P35908 639 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 RAB27AP51159 221 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 TPRNQ4KMQ1 711 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 XKR9Q5GH70 373 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 BMP8AQ7Z5Y6 402 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 SRGAP1Q7Z6B7 1085 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 DDX53Q86TM3 631 aaKnown RBP12.99□□□□□ -0.33
USP3-220ENST00000561381 FERMT3Q86UX7 667 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 TPH2Q8IWU9 490 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 ASIC4Q96FT7 647 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 ADAM7Q9H2U9 754 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 ZSWIM4Q9H7M6 989 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 XPNPEP1Q9NQW7 623 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 TSHZ2Q9NRE2 1034 aa12.99□□□□□ -0.33
USP3-220ENST00000561381 MYO10Q9HD67 2058 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 ZDBF2Q9HCK1 2354 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 A0A087WWV3 80 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 JAK2O60674 1132 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 SLITRK3O94933 977 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 EMP3P54852 163 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 ANAPC15P60006 121 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 SIGLEC14Q08ET2 396 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 ANKRD1Q15327 319 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 PTPN21Q16825 1174 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 RARS2Q5T160 578 aaKnown RBP12.98□□□□□ -0.33
USP3-220ENST00000561381 OTUD6AQ7L8S5 288 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 MRPL10Q7Z7H8 261 aaKnown RBP12.98□□□□□ -0.33
USP3-220ENST00000561381 SLFN12Q8IYM2 578 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 NSUN7Q8NE18 718 aaKnown RBP12.98□□□□□ -0.33
USP3-220ENST00000561381 PRSS33Q8NF86 280 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 SLC22A17Q8WUG5 538 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 WASF1Q92558 559 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 GTF3C6Q969F1 213 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 PGBD4Q96DM1 585 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 MTRQ99707 1265 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 NAP1L4Q99733 375 aaKnown RBP12.98□□□□□ -0.33
USP3-220ENST00000561381 EIF2AK1Q9BQI3 630 aaKnown RBP12.98□□□□□ -0.33
USP3-220ENST00000561381 EIF2AQ9BY44 585 aaKnown RBP12.98□□□□□ -0.33
USP3-220ENST00000561381 RSAD1Q9HA92 442 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 PPME1Q9Y570 386 aa12.98□□□□□ -0.33
USP3-220ENST00000561381 ARID2Q68CP9 1835 aa12.97□□□□□ -0.33
USP3-220ENST00000561381 BTBD18B2RXH4 712 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms