RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 SPTLC2O15270 562 aa15.61■□□□□ 0.09
LDLR-213ENST00000560502 CHMP2AO43633 222 aa15.61■□□□□ 0.09
LDLR-213ENST00000560502 CLASP2O75122 1294 aaKnown RBP15.61■□□□□ 0.09
LDLR-213ENST00000560502 GSE1Q14687 1217 aa15.61■□□□□ 0.09
LDLR-213ENST00000560502 SLC39A14Q15043 492 aa15.61■□□□□ 0.09
LDLR-213ENST00000560502 Q4G0T1 1027 aa15.61■□□□□ 0.09
LDLR-213ENST00000560502 NLRP7Q8WX94 980 aa15.61■□□□□ 0.09
LDLR-213ENST00000560502 MRPL9Q9BYD2 267 aaKnown RBP15.61■□□□□ 0.09
LDLR-213ENST00000560502 CHST12Q9NRB3 414 aa15.61■□□□□ 0.09
LDLR-213ENST00000560502 PLXNA3P51805 1871 aa15.61■□□□□ 0.09
LDLR-213ENST00000560502 CYP3A7-CYP3A51PA0A087WV96 503 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 M0R2N6 131 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 GADD45BO75293 160 aaPredicted RBP15.6■□□□□ 0.09
LDLR-213ENST00000560502 CYP3A7P24462 503 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 BCAR1P56945 870 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 ORC2Q13416 577 aaPredicted RBP15.6■□□□□ 0.09
LDLR-213ENST00000560502 SF3A1Q15459 793 aaKnown RBP15.6■□□□□ 0.09
LDLR-213ENST00000560502 TPRNQ4KMQ1 711 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 XKR3Q5GH77 459 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 CCDC183Q5T5S1 534 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 ADALQ6DHV7 355 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 CAVIN1Q6NZI2 390 aaKnown RBP15.6■□□□□ 0.09
LDLR-213ENST00000560502 KRT25Q7Z3Z0 450 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 TBCKQ8TEA7 893 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 RSPH1Q8WYR4 309 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 MBOAT7Q96N66 472 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 SCLT1Q96NL6 688 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 NECTIN4Q96NY8 510 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 GCOM2Q9BZD3 368 aaPredicted RBP15.6■□□□□ 0.09
LDLR-213ENST00000560502 ADAM7Q9H2U9 754 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 POMKQ9H5K3 350 aa15.6■□□□□ 0.09
LDLR-213ENST00000560502 DDX19AQ9NUU7 478 aaKnown RBP15.6■□□□□ 0.09
LDLR-213ENST00000560502 TMEM150BA6NC51 233 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 CSDE1O75534 798 aaKnown RBP15.59■□□□□ 0.09
LDLR-213ENST00000560502 TDP2O95551 362 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 PHKA2P46019 1235 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 ME1P48163 572 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 ZNF445P59923 1031 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 CDC42EP1Q00587 391 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 ITIH3Q06033 890 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 NR5A1Q13285 461 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 MTERF2Q49AM1 385 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 MIER3Q7Z3K6 550 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 TMEM173Q86WV6 379 aaPredicted RBP15.59■□□□□ 0.09
LDLR-213ENST00000560502 ETNPPLQ8TBG4 499 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 OXER1Q8TDS5 423 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 ZBP1Q9H171 429 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 SEPT9Q9UHD8 586 aaPredicted RBP15.59■□□□□ 0.09
LDLR-213ENST00000560502 NR2E1Q9Y466 385 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 IRAK3Q9Y616 596 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 CLIC4Q9Y696 253 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 ARID2Q68CP9 1835 aa15.59■□□□□ 0.09
LDLR-213ENST00000560502 A0A087WZ62 844 aa15.58■□□□□ 0.08
LDLR-213ENST00000560502 CCDC194A0A1B0GVG4 234 aa15.58■□□□□ 0.08
LDLR-213ENST00000560502 C2CD4DB7Z1M9 353 aa15.58■□□□□ 0.08
LDLR-213ENST00000560502 NT5C1B-RDH14C9J2C7 533 aa15.58■□□□□ 0.08
LDLR-213ENST00000560502 PDGFBP01127 241 aaPredicted RBP15.58■□□□□ 0.08
LDLR-213ENST00000560502 SFPQP23246 707 aaKnown RBP eCLIP15.58■□□□□ 0.08
LDLR-213ENST00000560502 SP100P23497 879 aaPredicted RBP15.58■□□□□ 0.08
LDLR-213ENST00000560502 AVPR2P30518 371 aa15.58■□□□□ 0.08
LDLR-213ENST00000560502 ALDH7A1P49419 539 aaKnown RBP15.58■□□□□ 0.08
LDLR-213ENST00000560502 PTPAQ15257 358 aa15.58■□□□□ 0.08
LDLR-213ENST00000560502 CES5AQ6NT32 575 aa15.58■□□□□ 0.08
LDLR-213ENST00000560502 MOXD1Q6UVY6 613 aa15.58■□□□□ 0.08
LDLR-213ENST00000560502 CCDC73Q6ZRK6 1079 aa15.58■□□□□ 0.08
LDLR-213ENST00000560502 ZNF410Q86VK4 478 aa15.58■□□□□ 0.08
LDLR-213ENST00000560502 KREMEN2Q8NCW0 462 aa15.58■□□□□ 0.08
LDLR-213ENST00000560502 TMEM169Q96HH4 297 aa15.58■□□□□ 0.08
LDLR-213ENST00000560502 FDXACB1Q9BRP7 624 aaPredicted RBP15.58■□□□□ 0.08
LDLR-213ENST00000560502 C2orf16Q68DN1 1984 aa15.58■□□□□ 0.08
LDLR-213ENST00000560502 ZFHX2Q9C0A1 2572 aaPredicted RBP15.58■□□□□ 0.08
LDLR-213ENST00000560502 CARNS1A5YM72 827 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 CUTAO60888 179 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 ZNF623O75123 536 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 MAFO75444 373 aaPredicted RBP15.57■□□□□ 0.08
LDLR-213ENST00000560502 CTSAP10619 480 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 MTHFRP42898 656 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 TOB1P50616 345 aaPredicted RBP15.57■□□□□ 0.08
LDLR-213ENST00000560502 POLGP54098 1239 aaPredicted RBP15.57■□□□□ 0.08
LDLR-213ENST00000560502 CEBPZQ03701 1054 aaKnown RBP15.57■□□□□ 0.08
LDLR-213ENST00000560502 ZSCAN23Q3MJ62 389 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 ANO5Q75V66 913 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 DDX53Q86TM3 631 aaKnown RBP15.57■□□□□ 0.08
LDLR-213ENST00000560502 VPS52Q8N1B4 723 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 SLC22A17Q8WUG5 538 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 BCL7CQ8WUZ0 217 aaPredicted RBP15.57■□□□□ 0.08
LDLR-213ENST00000560502 LPPQ93052 612 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 IGSF21Q96ID5 467 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 RIPOR3Q96MK2 946 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 SH2D3AQ9BRG2 576 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 NRDE2Q9H7Z3 1164 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 TBC1D13Q9NVG8 400 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 DZANK1Q9NVP4 752 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 SORCS3Q9UPU3 1222 aa15.57■□□□□ 0.08
LDLR-213ENST00000560502 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.56■□□□□ 0.08
LDLR-213ENST00000560502 MEIS3P2A8K0S8 358 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 B4GALT3O60512 393 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 ZC3H11AO75152 810 aaKnown RBP eCLIP15.56■□□□□ 0.08
LDLR-213ENST00000560502 CXCL14O95715 111 aa15.56■□□□□ 0.08
LDLR-213ENST00000560502 SKIP12755 728 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms