RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 COL4A3BPQ9Y5P4 624 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 CNTNAP2Q9UHC6 1331 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 H0Y858 1186 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 EML1O00423 815 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 TBX3O15119 743 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 GFRA3O60609 400 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 NR1I2O75469 434 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 BAG4O95429 457 aaKnown RBP10.25□□□□□ -0.77
HDDC3-204ENST00000559834 PDGFBP01127 241 aaPredicted RBP10.25□□□□□ -0.77
HDDC3-204ENST00000559834 WEE2P0C1S8 567 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 CLCN5P51795 746 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 NPEPPSP55786 919 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 EPHA7Q15375 998 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 PLA2G4FQ68DD2 849 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 ASTLQ6HA08 431 aaPredicted RBP10.25□□□□□ -0.77
HDDC3-204ENST00000559834 TMC5Q6UXY8 1006 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 NEK8Q86SG6 692 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 GPR149Q86SP6 731 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 TMEM173Q86WV6 379 aaPredicted RBP10.25□□□□□ -0.77
HDDC3-204ENST00000559834 ZNF280BQ86YH2 543 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 C4orf19Q8IY42 314 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 KLHL5Q96PQ7 755 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 TM6SF1Q9BZW5 370 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 DHX33Q9H6R0 707 aaKnown RBP10.25□□□□□ -0.77
HDDC3-204ENST00000559834 DNAJB4Q9UDY4 337 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 CDH22Q9UJ99 828 aa10.25□□□□□ -0.77
HDDC3-204ENST00000559834 MEIS3P2A8K0S8 358 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 CCNT1O60563 726 aaKnown RBP10.24□□□□□ -0.77
HDDC3-204ENST00000559834 DDHD2O94830 711 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 ERLIN2O94905 339 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 SSBP05455 408 aaKnown RBP eCLIP10.24□□□□□ -0.77
HDDC3-204ENST00000559834 ASGR2P07307 311 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 ITGA4P13612 1032 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 NCLP19338 710 aaKnown RBP10.24□□□□□ -0.77
HDDC3-204ENST00000559834 AXLP30530 894 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 YWHABP31946 246 aaKnown RBP10.24□□□□□ -0.77
HDDC3-204ENST00000559834 LAMTOR4Q0VGL1 99 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 STK3Q13188 491 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 MXD4Q14582 209 aaPredicted RBP10.24□□□□□ -0.77
HDDC3-204ENST00000559834 PTPN14Q15678 1187 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 KANK3Q6NY19 840 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 CYP26C1Q6V0L0 522 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 AGMOQ6ZNB7 445 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 C15orf39Q6ZRI6 1047 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 CCDC149Q6ZUS6 474 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 SLFN12Q8IYM2 578 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 RNF149Q8NC42 400 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 TMEM143Q96AN5 459 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 PHF20Q9BVI0 1012 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 ZSWIM4Q9H7M6 989 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 KCNMB3Q9NPA1 279 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 PDRG1Q9NUG6 133 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 FAM86C1Q9NVL1 165 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 KCNJ14Q9UNX9 436 aa10.24□□□□□ -0.77
HDDC3-204ENST00000559834 PROB1E7EW31 1015 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 NRP1O14786 923 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 SLC37A4O43826 429 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 LILRB3O75022 631 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 POMCP01189 267 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 SOD2P04179 222 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 URODP06132 367 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 ADH1AP07327 375 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 CNPP09543 421 aaKnown RBP10.23□□□□□ -0.77
HDDC3-204ENST00000559834 HOXA11P31270 313 aaPredicted RBP10.23□□□□□ -0.77
HDDC3-204ENST00000559834 CLCN4P51793 760 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 POU5F1BQ06416 359 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 TDGQ13569 410 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 TFDP1Q14186 410 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 NPY5RQ15761 445 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 XKR9Q5GH70 373 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 NOTUMQ6P988 496 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 FERMT3Q86UX7 667 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 TPH2Q8IWU9 490 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 HACE1Q8IYU2 909 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 BCL7CQ8WUZ0 217 aaPredicted RBP10.23□□□□□ -0.77
HDDC3-204ENST00000559834 WASF1Q92558 559 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 STAMQ92783 540 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 CCDC51Q96ER9 411 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 AIFM3Q96NN9 605 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 MTRQ99707 1265 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 LARP6Q9BRS8 491 aaKnown RBP10.23□□□□□ -0.77
HDDC3-204ENST00000559834 IGSF9Q9P2J2 1179 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 VAV3Q9UKW4 847 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 WDR81Q562E7 1941 aa10.23□□□□□ -0.77
HDDC3-204ENST00000559834 C1RP00736 705 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 OR1G1P47890 313 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 AK2P54819 239 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 EMC2Q15006 297 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 UBXN11Q5T124 520 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 NCAPH2Q6IBW4 605 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 PIK3AP1Q6ZUJ8 805 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 COLGALT2Q8IYK4 626 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 TMEM105Q8N8V8 129 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 ZNF579Q8NAF0 562 aaKnown RBP10.22□□□□□ -0.77
HDDC3-204ENST00000559834 CMASQ8NFW8 434 aaPredicted RBP10.22□□□□□ -0.77
HDDC3-204ENST00000559834 HAS1Q92839 578 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 RPS6KC1Q96S38 1066 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 RTP3Q9BQQ7 232 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 LXNQ9BS40 222 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 COLEC11Q9BWP8 271 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms