RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 SLC11A1P49279 550 aa14.66□□□□□ -0.06
TPM1-220ENST00000559556 NUBP1P53384 320 aa14.66□□□□□ -0.06
TPM1-220ENST00000559556 NPEPPSP55786 919 aa14.66□□□□□ -0.06
TPM1-220ENST00000559556 LONRF3Q496Y0 759 aa14.66□□□□□ -0.06
TPM1-220ENST00000559556 PPP4R3AQ6IN85 833 aa14.66□□□□□ -0.06
TPM1-220ENST00000559556 AGMOQ6ZNB7 445 aa14.66□□□□□ -0.06
TPM1-220ENST00000559556 EXOC8Q8IYI6 725 aa14.66□□□□□ -0.06
TPM1-220ENST00000559556 SLC7A3Q8WY07 619 aa14.66□□□□□ -0.06
TPM1-220ENST00000559556 PGBD4Q96DM1 585 aa14.66□□□□□ -0.06
TPM1-220ENST00000559556 WRAP73Q9P2S5 460 aaPredicted RBP14.66□□□□□ -0.06
TPM1-220ENST00000559556 STK39Q9UEW8 545 aa14.66□□□□□ -0.06
TPM1-220ENST00000559556 USTQ9Y2C2 406 aa14.66□□□□□ -0.06
TPM1-220ENST00000559556 PCDHB2Q9Y5E7 798 aa14.66□□□□□ -0.06
TPM1-220ENST00000559556 CNTNAP2Q9UHC6 1331 aa14.66□□□□□ -0.06
TPM1-220ENST00000559556 TBX3O15119 743 aa14.65□□□□□ -0.06
TPM1-220ENST00000559556 GAS2O43903 313 aaKnown RBP14.65□□□□□ -0.06
TPM1-220ENST00000559556 P4HBP07237 508 aaKnown RBP14.65□□□□□ -0.06
TPM1-220ENST00000559556 RFC5P40937 340 aa14.65□□□□□ -0.06
TPM1-220ENST00000559556 STK3Q13188 491 aa14.65□□□□□ -0.06
TPM1-220ENST00000559556 PTPN14Q15678 1187 aa14.65□□□□□ -0.06
TPM1-220ENST00000559556 LETM2Q2VYF4 491 aa14.65□□□□□ -0.06
TPM1-220ENST00000559556 SRGAP1Q7Z6B7 1085 aa14.65□□□□□ -0.06
TPM1-220ENST00000559556 MRPL10Q7Z7H8 261 aaKnown RBP14.65□□□□□ -0.06
TPM1-220ENST00000559556 NEK8Q86SG6 692 aa14.65□□□□□ -0.06
TPM1-220ENST00000559556 PPFIBP1Q86W92 1011 aa14.65□□□□□ -0.06
TPM1-220ENST00000559556 ZNF280BQ86YH2 543 aa14.65□□□□□ -0.06
TPM1-220ENST00000559556 ZDHHC14Q8IZN3 488 aa14.65□□□□□ -0.06
TPM1-220ENST00000559556 C12orf76Q8N812 135 aaPredicted RBP14.65□□□□□ -0.06
TPM1-220ENST00000559556 ZNF579Q8NAF0 562 aaKnown RBP14.65□□□□□ -0.06
TPM1-220ENST00000559556 TDRD5Q8NAT2 981 aaKnown RBP14.65□□□□□ -0.06
TPM1-220ENST00000559556 URGCPQ8TCY9 931 aa14.65□□□□□ -0.06
TPM1-220ENST00000559556 PSPC1Q8WXF1 523 aaKnown RBP14.65□□□□□ -0.06
TPM1-220ENST00000559556 GBP3Q9H0R5 595 aa14.65□□□□□ -0.06
TPM1-220ENST00000559556 IRF2BPLQ9H1B7 796 aa14.65□□□□□ -0.06
TPM1-220ENST00000559556 MINDY3Q9H8M7 445 aa14.65□□□□□ -0.06
TPM1-220ENST00000559556 KCNJ14Q9UNX9 436 aa14.65□□□□□ -0.06
TPM1-220ENST00000559556 CCDC194A0A1B0GVG4 234 aa14.64□□□□□ -0.07
TPM1-220ENST00000559556 CDKL5O76039 1030 aa14.64□□□□□ -0.07
TPM1-220ENST00000559556 WEE2P0C1S8 567 aa14.64□□□□□ -0.07
TPM1-220ENST00000559556 HOXA11P31270 313 aaPredicted RBP14.64□□□□□ -0.07
TPM1-220ENST00000559556 LAMTOR4Q0VGL1 99 aa14.64□□□□□ -0.07
TPM1-220ENST00000559556 UBXN11Q5T124 520 aa14.64□□□□□ -0.07
TPM1-220ENST00000559556 C4orf19Q8IY42 314 aa14.64□□□□□ -0.07
TPM1-220ENST00000559556 PLCD3Q8N3E9 789 aa14.64□□□□□ -0.07
TPM1-220ENST00000559556 TMEM87AQ8NBN3 555 aa14.64□□□□□ -0.07
TPM1-220ENST00000559556 PRPF31Q8WWY3 499 aaKnown RBP14.64□□□□□ -0.07
TPM1-220ENST00000559556 HAS1Q92839 578 aa14.64□□□□□ -0.07
TPM1-220ENST00000559556 CEP170P1Q96L14 293 aa14.64□□□□□ -0.07
TPM1-220ENST00000559556 LARP6Q9BRS8 491 aaKnown RBP14.64□□□□□ -0.07
TPM1-220ENST00000559556 LXNQ9BS40 222 aa14.64□□□□□ -0.07
TPM1-220ENST00000559556 SFXN1Q9H9B4 322 aa14.64□□□□□ -0.07
TPM1-220ENST00000559556 RSAD1Q9HA92 442 aa14.64□□□□□ -0.07
TPM1-220ENST00000559556 DDHD2O94830 711 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 CLCN4P51793 760 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 AFF1P51825 1210 aaKnown RBP14.63□□□□□ -0.07
TPM1-220ENST00000559556 SPIRE1Q08AE8 756 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 SCRN1Q12765 414 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 EMC2Q15006 297 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 EPHA7Q15375 998 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 ATAT1Q5SQI0 421 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 KANK3Q6NY19 840 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 CABP7Q86V35 215 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 POTEDQ86YR6 584 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 TCP11Q8WWU5 503 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 TMEM143Q96AN5 459 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 NAP1L4Q99733 375 aaKnown RBP14.63□□□□□ -0.07
TPM1-220ENST00000559556 TMEM175Q9BSA9 504 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 SLKQ9H2G2 1235 aaPredicted RBP14.63□□□□□ -0.07
TPM1-220ENST00000559556 SMOC2Q9H3U7 446 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 FAM86C1Q9NVL1 165 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 KANSL3Q9P2N6 904 aa14.63□□□□□ -0.07
TPM1-220ENST00000559556 DBR1Q9UK59 544 aaKnown RBP14.63□□□□□ -0.07
TPM1-220ENST00000559556 INPPL1O15357 1258 aa14.62□□□□□ -0.07
TPM1-220ENST00000559556 ASAP2O43150 1006 aa14.62□□□□□ -0.07
TPM1-220ENST00000559556 GALR2O43603 387 aaPredicted RBP14.62□□□□□ -0.07
TPM1-220ENST00000559556 ST18O60284 1047 aa14.62□□□□□ -0.07
TPM1-220ENST00000559556 CCNT1O60563 726 aaKnown RBP14.62□□□□□ -0.07
TPM1-220ENST00000559556 LILRB3O75022 631 aa14.62□□□□□ -0.07
TPM1-220ENST00000559556 ASGR2P07307 311 aa14.62□□□□□ -0.07
TPM1-220ENST00000559556 SRGAP2CP0DJJ0 459 aa14.62□□□□□ -0.07
TPM1-220ENST00000559556 XBP1P17861 261 aa14.62□□□□□ -0.07
TPM1-220ENST00000559556 NCLP19338 710 aaKnown RBP14.62□□□□□ -0.07
TPM1-220ENST00000559556 YWHABP31946 246 aaKnown RBP14.62□□□□□ -0.07
TPM1-220ENST00000559556 PCBP1Q15365 356 aaKnown RBP eCLIP14.62□□□□□ -0.074e-6■□□□□ 10.4
TPM1-220ENST00000559556 RALGAPA1Q6GYQ0 2036 aa14.62□□□□□ -0.07
TPM1-220ENST00000559556 TMC5Q6UXY8 1006 aa14.62□□□□□ -0.07
TPM1-220ENST00000559556 GPR149Q86SP6 731 aa14.62□□□□□ -0.07
TPM1-220ENST00000559556 FERMT3Q86UX7 667 aa14.62□□□□□ -0.07
TPM1-220ENST00000559556 FEZF2Q8TBJ5 459 aa14.62□□□□□ -0.07
TPM1-220ENST00000559556 OXER1Q8TDS5 423 aa14.62□□□□□ -0.07
TPM1-220ENST00000559556 EMILIN2Q9BXX0 1053 aa14.62□□□□□ -0.07
TPM1-220ENST00000559556 PDRG1Q9NUG6 133 aa14.62□□□□□ -0.07
TPM1-220ENST00000559556 NRP1O14786 923 aa14.61□□□□□ -0.07
TPM1-220ENST00000559556 SOD2P04179 222 aa14.61□□□□□ -0.07
TPM1-220ENST00000559556 CNPP09543 421 aaKnown RBP14.61□□□□□ -0.07
TPM1-220ENST00000559556 C15orf39Q6ZRI6 1047 aa14.61□□□□□ -0.07
TPM1-220ENST00000559556 PIK3AP1Q6ZUJ8 805 aa14.61□□□□□ -0.07
TPM1-220ENST00000559556 CCDC149Q6ZUS6 474 aa14.61□□□□□ -0.07
TPM1-220ENST00000559556 OTUD6AQ7L8S5 288 aa14.61□□□□□ -0.07
TPM1-220ENST00000559556 SLFN12Q8IYM2 578 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms