RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 MTIF3Q9H2K0 278 aaKnown RBP10.15□□□□□ -0.78
LDLR-210ENST00000559340 FZD8Q9H461 694 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 IL23AQ9NPF7 189 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 NOC2LQ9Y3T9 749 aaKnown RBP10.15□□□□□ -0.78
LDLR-210ENST00000559340 TTC3P53804 2025 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 N4BP3O15049 544 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 CXCL10P02778 98 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 PRR29P0C7W0 189 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 GHRP10912 638 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 CASP1P29466 404 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 NMT1P30419 496 aaKnown RBP10.14□□□□□ -0.79
LDLR-210ENST00000559340 SARSP49591 514 aaKnown RBP10.14□□□□□ -0.79
LDLR-210ENST00000559340 MBTD1Q05BQ5 628 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 PRPF4BQ13523 1007 aaKnown RBP10.14□□□□□ -0.79
LDLR-210ENST00000559340 IKBKEQ14164 716 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 LPIN1Q14693 890 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 PLEKHG4Q58EX7 1191 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 L1TD1Q5T7N2 865 aaKnown RBP10.14□□□□□ -0.79
LDLR-210ENST00000559340 SLFN12LQ6IEE8 588 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 CNKSR3Q6P9H4 555 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 TRAF7Q6Q0C0 670 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 SASS6Q6UVJ0 657 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 ZPBP2Q6X784 338 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 HACE1Q8IYU2 909 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 MYOCDQ8IZQ8 938 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 SPATA20Q8TB22 786 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 GOLGA5Q8TBA6 731 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 ZNF507Q8TCN5 953 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 BICD1Q96G01 975 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 SCLYQ96I15 445 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 ZNF668Q96K58 619 aaPredicted RBP10.14□□□□□ -0.79
LDLR-210ENST00000559340 ANP32EQ9BTT0 268 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 IFIH1Q9BYX4 1025 aaKnown RBP10.14□□□□□ -0.79
LDLR-210ENST00000559340 WNT8AQ9H1J5 351 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 CDHR5Q9HBB8 845 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 SLC39A2Q9NP94 309 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 TBC1D7Q9P0N9 293 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 CGNQ9P2M7 1197 aaKnown RBP10.14□□□□□ -0.79
LDLR-210ENST00000559340 DACH1Q9UI36 760 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 ZMYND8Q9ULU4 1186 aaPredicted RBP10.14□□□□□ -0.79
LDLR-210ENST00000559340 PADI3Q9ULW8 664 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 TBX20Q9UMR3 447 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 ST3GAL5Q9UNP4 418 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 LTBP2Q14767 1821 aa10.14□□□□□ -0.79
LDLR-210ENST00000559340 ABHD14A-ACY1A0A1B0GW23 586 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 KIAA0391O15091 583 aaKnown RBP10.13□□□□□ -0.79
LDLR-210ENST00000559340 NBNO60934 754 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 FGBP02675 491 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 CD52P31358 61 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 BMP8BP34820 402 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 MATR3P43243 847 aaKnown RBP eCLIP10.13□□□□□ -0.79
LDLR-210ENST00000559340 LIG4P49917 911 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 RAB27AP51159 221 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 EHHADHQ08426 723 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 KYAT1Q16773 422 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 CT47A1Q5JQC4 288 aaPredicted RBP10.13□□□□□ -0.79
LDLR-210ENST00000559340 CAVIN1Q6NZI2 390 aaKnown RBP10.13□□□□□ -0.79
LDLR-210ENST00000559340 NOTUMQ6P988 496 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 PSRC1Q6PGN9 363 aaPredicted RBP10.13□□□□□ -0.79
LDLR-210ENST00000559340 HS2ST1Q7LGA3 356 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 DEFB128Q7Z7B8 93 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 FAM228AQ86W67 206 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 GUF1Q8N442 669 aaKnown RBP10.13□□□□□ -0.79
LDLR-210ENST00000559340 DBF4BQ8NFT6 615 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 BADQ92934 168 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 TCHPQ9BT92 498 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 ERVK-5Q9HDB9 667 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 C1orf112Q9NSG2 853 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 AGPAT5Q9NUQ2 364 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 MAN1B1Q9UKM7 699 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 DNAH12Q6ZR08 3092 aa10.13□□□□□ -0.79
LDLR-210ENST00000559340 UMODL1Q5DID0 1318 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 PSMA7O14818 248 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 CALUO43852 315 aaPredicted RBP10.12□□□□□ -0.79
LDLR-210ENST00000559340 PPP1R37O75864 691 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 BAIAP3O94812 1187 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 PRPF6O94906 941 aaKnown RBP10.12□□□□□ -0.79
LDLR-210ENST00000559340 PIGRP01833 764 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 CSF2RAP15509 400 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 SYN1P17600 705 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 STK4Q13043 487 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 MORC3Q14149 939 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 BMT2Q1RMZ1 405 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 DCAF4L1Q3SXM0 396 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 COBLL1Q53SF7 1204 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 ATF7IP2Q5U623 682 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 TWF2Q6IBS0 349 aaKnown RBP10.12□□□□□ -0.79
LDLR-210ENST00000559340 GPR153Q6NV75 609 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 RBM43Q6ZSC3 357 aaKnown RBP10.12□□□□□ -0.79
LDLR-210ENST00000559340 MAP4K3Q8IVH8 894 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 MLKLQ8NB16 471 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 TMEM40Q8WWA1 233 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 DHTKD1Q96HY7 919 aaPredicted RBP10.12□□□□□ -0.79
LDLR-210ENST00000559340 FIZ1Q96SL8 496 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 TSG101Q99816 390 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 KIFC3Q9BVG8 833 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 STRA6Q9BX79 667 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 TRIM6Q9C030 488 aaPredicted RBP10.12□□□□□ -0.79
LDLR-210ENST00000559340 CCDC113Q9H0I3 377 aa10.12□□□□□ -0.79
LDLR-210ENST00000559340 GBP3Q9H0R5 595 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms