RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 WASHC2CQ9Y4E1 1318 aa6.25□□□□□ -1.41
SCFD1-221ENST00000556534 MT-CO1P00395 513 aa6.25□□□□□ -1.41
SCFD1-221ENST00000556534 LTA4HP09960 611 aaKnown RBP6.25□□□□□ -1.41
SCFD1-221ENST00000556534 OSMP13725 252 aa6.25□□□□□ -1.41
SCFD1-221ENST00000556534 MTHFD2P13995 350 aa6.25□□□□□ -1.41
SCFD1-221ENST00000556534 NCLP19338 710 aaKnown RBP6.25□□□□□ -1.41
SCFD1-221ENST00000556534 RPS19P39019 145 aaKnown RBP6.25□□□□□ -1.41
SCFD1-221ENST00000556534 CDK17Q00537 523 aa6.25□□□□□ -1.41
SCFD1-221ENST00000556534 ITKQ08881 620 aa6.25□□□□□ -1.41
SCFD1-221ENST00000556534 ADRM1Q16186 407 aa6.25□□□□□ -1.41
SCFD1-221ENST00000556534 BRDTQ58F21 947 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-221ENST00000556534 TAS1R1Q7RTX1 841 aa6.25□□□□□ -1.41
SCFD1-221ENST00000556534 C1orf162Q8NEQ5 155 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-221ENST00000556534 LOXL4Q96JB6 756 aa6.25□□□□□ -1.41
SCFD1-221ENST00000556534 WWC2-AS2Q96NR7 200 aa6.25□□□□□ -1.41
SCFD1-221ENST00000556534 NELFAQ9H3P2 528 aa6.25□□□□□ -1.41
SCFD1-221ENST00000556534 IL23AQ9NPF7 189 aa6.25□□□□□ -1.41
SCFD1-221ENST00000556534 HOMER2Q9NSB8 354 aa6.25□□□□□ -1.41
SCFD1-221ENST00000556534 SCOCQ9UIL1 159 aa6.25□□□□□ -1.41
SCFD1-221ENST00000556534 A0A1W2PRX2 142 aa6.24□□□□□ -1.41
SCFD1-221ENST00000556534 AGXTP21549 392 aa6.24□□□□□ -1.41
SCFD1-221ENST00000556534 CCT2P78371 535 aaKnown RBP6.24□□□□□ -1.41
SCFD1-221ENST00000556534 KRT40Q6A162 431 aa6.24□□□□□ -1.41
SCFD1-221ENST00000556534 GLB1L3Q8NCI6 653 aaPredicted RBP6.24□□□□□ -1.41
SCFD1-221ENST00000556534 Q8TCH9 128 aa6.24□□□□□ -1.41
SCFD1-221ENST00000556534 ST6GALNAC2Q9UJ37 374 aa6.24□□□□□ -1.41
SCFD1-221ENST00000556534 JAG2Q9Y219 1238 aa6.24□□□□□ -1.41
SCFD1-221ENST00000556534 GPR45Q9Y5Y3 372 aa6.24□□□□□ -1.41
SCFD1-221ENST00000556534 RBP3P10745 1247 aa6.23□□□□□ -1.41
SCFD1-221ENST00000556534 CTSSP25774 331 aa6.23□□□□□ -1.41
SCFD1-221ENST00000556534 WNT3AP56704 352 aa6.23□□□□□ -1.41
SCFD1-221ENST00000556534 ANAPC15P60006 121 aa6.23□□□□□ -1.41
SCFD1-221ENST00000556534 UBE3CQ15386 1083 aa6.23□□□□□ -1.41
SCFD1-221ENST00000556534 ANO4Q32M45 955 aa6.23□□□□□ -1.41
SCFD1-221ENST00000556534 MBNL2Q5VZF2 373 aaKnown RBP6.23□□□□□ -1.41
SCFD1-221ENST00000556534 BTNL9Q6UXG8 535 aa6.23□□□□□ -1.41
SCFD1-221ENST00000556534 ABHD15Q6UXT9 468 aa6.23□□□□□ -1.41
SCFD1-221ENST00000556534 POLNQ7Z5Q5 900 aa6.23□□□□□ -1.41
SCFD1-221ENST00000556534 PAWRQ96IZ0 340 aaKnown RBP6.23□□□□□ -1.41
SCFD1-221ENST00000556534 C8orf49Q96NF6 230 aa6.23□□□□□ -1.41
SCFD1-221ENST00000556534 ACE2Q9BYF1 805 aaPredicted RBP6.23□□□□□ -1.41
SCFD1-221ENST00000556534 ENKD1Q9H0I2 346 aa6.23□□□□□ -1.41
SCFD1-221ENST00000556534 SMPD4Q9NXE4 827 aa6.23□□□□□ -1.41
SCFD1-221ENST00000556534 NRP1O14786 923 aa6.22□□□□□ -1.41
SCFD1-221ENST00000556534 PRAMEF4O60810 478 aa6.22□□□□□ -1.41
SCFD1-221ENST00000556534 ZNF623O75123 536 aa6.22□□□□□ -1.41
SCFD1-221ENST00000556534 MYBL2P10244 700 aa6.22□□□□□ -1.41
SCFD1-221ENST00000556534 SLC5A3P53794 718 aa6.22□□□□□ -1.41
SCFD1-221ENST00000556534 KRT85P78386 507 aa6.22□□□□□ -1.41
SCFD1-221ENST00000556534 FOXL1Q12952 345 aa6.22□□□□□ -1.41
SCFD1-221ENST00000556534 AMOTL1Q8IY63 956 aa6.22□□□□□ -1.41
SCFD1-221ENST00000556534 CMTM4Q8IZR5 234 aa6.22□□□□□ -1.41
SCFD1-221ENST00000556534 LILRA3Q8N6C8 439 aaPredicted RBP6.22□□□□□ -1.41
SCFD1-221ENST00000556534 SNX33Q8WV41 574 aa6.22□□□□□ -1.41
SCFD1-221ENST00000556534 STAG1Q8WVM7 1258 aa6.22□□□□□ -1.41
SCFD1-221ENST00000556534 TMEM176AQ96HP8 235 aa6.22□□□□□ -1.41
SCFD1-221ENST00000556534 SMAD5Q99717 465 aaKnown RBP6.22□□□□□ -1.41
SCFD1-221ENST00000556534 KRTAP4-2Q9BYR5 136 aa6.22□□□□□ -1.41
SCFD1-221ENST00000556534 TLR9Q9NR96 1032 aa6.22□□□□□ -1.41
SCFD1-221ENST00000556534 TYW1Q9NV66 732 aaKnown RBP6.22□□□□□ -1.41
SCFD1-221ENST00000556534 PLA2G3Q9NZ20 509 aa6.22□□□□□ -1.41
SCFD1-221ENST00000556534 SHTN1A0MZ66 631 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 UBE2QL1A1L167 161 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 PCDHGA12O60330 932 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 CFBP00751 764 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 COMTP21964 271 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 MSX2P35548 267 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-221ENST00000556534 MAGEA10P43363 369 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-221ENST00000556534 SELENOPP49908 381 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 IGBP1P78318 339 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 MALLQ13021 153 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 GRM7Q14831 915 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 MST1LQ2TV78 715 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 C19orf54Q5BKX5 351 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 PGM2L1Q6PCE3 622 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 SSH1Q8WYL5 1049 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 FATE1Q969F0 183 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 FUBP3Q96I24 572 aaKnown RBP eCLIP6.21□□□□□ -1.42
SCFD1-221ENST00000556534 FAXDC2Q96IV6 333 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 DMRT3Q9NQL9 472 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 MKS1Q9NXB0 559 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 RCAN3Q9UKA8 241 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 PCDHGA9Q9Y5G4 932 aaKnown RBP6.21□□□□□ -1.42
SCFD1-221ENST00000556534 PCDHGA8Q9Y5G5 932 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 PCDHGA7Q9Y5G6 932 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 PCDHGA6Q9Y5G7 932 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 PCDHGA3Q9Y5H0 932 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 PCDHGA2Q9Y5H1 932 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 NCANO14594 1321 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 TNKSO95271 1327 aa6.21□□□□□ -1.42
SCFD1-221ENST00000556534 B8ZZF3 427 aa6.2□□□□□ -1.42
SCFD1-221ENST00000556534 KRTAP10-2P60368 255 aa6.2□□□□□ -1.42
SCFD1-221ENST00000556534 ADAM17P78536 824 aa6.2□□□□□ -1.42
SCFD1-221ENST00000556534 PPP3CAQ08209 521 aa6.2□□□□□ -1.42
SCFD1-221ENST00000556534 R3HDM1Q15032 1099 aaKnown RBP6.2□□□□□ -1.42
SCFD1-221ENST00000556534 PCBP2Q15366 365 aaKnown RBP eCLIP6.2□□□□□ -1.42
SCFD1-221ENST00000556534 SPATS1Q496A3 300 aa6.2□□□□□ -1.42
SCFD1-221ENST00000556534 Q6ZSN1 163 aa6.2□□□□□ -1.42
SCFD1-221ENST00000556534 ZNF480Q8WV37 535 aa6.2□□□□□ -1.42
SCFD1-221ENST00000556534 RIN2Q8WYP3 895 aaPredicted RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms