RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 IRF5Q13568 498 aa9.71□□□□□ -0.85
TDP1-210ENST00000554976 BRDTQ58F21 947 aaPredicted RBP9.71□□□□□ -0.85
TDP1-210ENST00000554976 DCAF17Q5H9S7 520 aaPredicted RBP9.71□□□□□ -0.85
TDP1-210ENST00000554976 GBP6Q6ZN66 633 aa9.71□□□□□ -0.85
TDP1-210ENST00000554976 SAPCD2Q86UD0 394 aa9.71□□□□□ -0.85
TDP1-210ENST00000554976 TRIM50Q86XT4 487 aa9.71□□□□□ -0.85
TDP1-210ENST00000554976 TMEM143Q96AN5 459 aa9.71□□□□□ -0.85
TDP1-210ENST00000554976 FAM167AQ96KS9 214 aa9.71□□□□□ -0.85
TDP1-210ENST00000554976 PCIF1Q9H4Z3 704 aa9.71□□□□□ -0.85
TDP1-210ENST00000554976 MYO1AQ9UBC5 1043 aa9.71□□□□□ -0.85
TDP1-210ENST00000554976 EXOC7Q9UPT5 735 aa9.71□□□□□ -0.85
TDP1-210ENST00000554976 FRMD4BQ9Y2L6 1034 aa9.71□□□□□ -0.85
TDP1-210ENST00000554976 MRFAP1Q9Y605 127 aa9.71□□□□□ -0.85
TDP1-210ENST00000554976 LRRIQ3A6PVS8 624 aaPredicted RBP9.71□□□□□ -0.86
TDP1-210ENST00000554976 SLC26A2P50443 739 aa9.71□□□□□ -0.86
TDP1-210ENST00000554976 VAMP7P51809 220 aa9.71□□□□□ -0.86
TDP1-210ENST00000554976 VAV2P52735 878 aa9.71□□□□□ -0.86
TDP1-210ENST00000554976 SMTNP53814 917 aa9.71□□□□□ -0.86
TDP1-210ENST00000554976 AMPD2Q01433 879 aa9.71□□□□□ -0.86
TDP1-210ENST00000554976 GJB7Q6PEY0 223 aa9.71□□□□□ -0.86
TDP1-210ENST00000554976 PPTC7Q8NI37 304 aa9.71□□□□□ -0.86
TDP1-210ENST00000554976 SCFD2Q8WU76 684 aa9.71□□□□□ -0.86
TDP1-210ENST00000554976 C16orf70Q9BSU1 422 aa9.71□□□□□ -0.86
TDP1-210ENST00000554976 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.71□□□□□ -0.86
TDP1-210ENST00000554976 DNAI1Q9UI46 699 aa9.71□□□□□ -0.86
TDP1-210ENST00000554976 FRMPD3Q5JV73 1810 aa9.71□□□□□ -0.86
TDP1-210ENST00000554976 SLC15A5A6NIM6 579 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 LRRN2O75325 713 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 TXNP10599 105 aaKnown RBP9.7□□□□□ -0.86
TDP1-210ENST00000554976 POLGP54098 1239 aaPredicted RBP9.7□□□□□ -0.86
TDP1-210ENST00000554976 TTLL4Q14679 1199 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 SFMBT2Q5VUG0 894 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 PHLDB3Q6NSJ2 640 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 C17orf99Q6UX52 265 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 CBWD2Q8IUF1 395 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 SYCP3Q8IZU3 236 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 ZNF710Q8N1W2 664 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 MSL3Q8N5Y2 521 aaKnown RBP9.7□□□□□ -0.86
TDP1-210ENST00000554976 SLC30A5Q8TAD4 765 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 TMC2Q8TDI7 906 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 PCMTD1Q96MG8 357 aaPredicted RBP9.7□□□□□ -0.86
TDP1-210ENST00000554976 SPATA33Q96N06 139 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 INTS2Q9H0H0 1204 aaKnown RBP9.7□□□□□ -0.86
TDP1-210ENST00000554976 NLRC4Q9NPP4 1024 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 LZTFL1Q9NQ48 299 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 F8VZ95 297 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 EXOC3O60645 756 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 PROZP22891 400 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 MAPK4P31152 587 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 CYLC1P35663 651 aaPredicted RBP9.7□□□□□ -0.86
TDP1-210ENST00000554976 CYP24A1Q07973 514 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 SNRNP35Q16560 246 aaKnown RBP9.7□□□□□ -0.86
TDP1-210ENST00000554976 PLEKHH3Q7Z736 793 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 EHBP1Q8NDI1 1231 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 PARD3BQ8TEW8 1205 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 TMEM117Q9H0C3 514 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 HAUS4Q9H6D7 363 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 MLXIPQ9HAP2 919 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 NRBP2Q9NSY0 501 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 FLRT1Q9NZU1 646 aa9.7□□□□□ -0.86
TDP1-210ENST00000554976 TTLL13PA6NNM8 815 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 CCDC169A6NNP5 214 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 H0YCG3 227 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 GAS2O43903 313 aaKnown RBP9.69□□□□□ -0.86
TDP1-210ENST00000554976 MSCO60682 206 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 C22orf31O95567 290 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 HOXC6P09630 235 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 SMPD1P17405 629 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 KRT83P78385 493 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 ZNF571Q7Z3V5 609 aaPredicted RBP9.69□□□□□ -0.86
TDP1-210ENST00000554976 PSPC1Q8WXF1 523 aaKnown RBP9.69□□□□□ -0.86
TDP1-210ENST00000554976 ANKRD7Q92527 254 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 CCDC43Q96MW1 224 aaKnown RBP9.69□□□□□ -0.86
TDP1-210ENST00000554976 PCDHA13Q9Y5I0 950 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 TLL2Q9Y6L7 1015 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 COL1A2P08123 1366 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 ADCY3O60266 1144 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 LGALS2P05162 132 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 CTGFP29279 349 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 MYL7Q01449 175 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 GFPT1Q06210 699 aaPredicted RBP9.69□□□□□ -0.86
TDP1-210ENST00000554976 LAMC2Q13753 1193 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 GJC2Q5T442 439 aaPredicted RBP9.69□□□□□ -0.86
TDP1-210ENST00000554976 TRMT1LQ7Z2T5 733 aaKnown RBP9.69□□□□□ -0.86
TDP1-210ENST00000554976 ARHGEF19Q8IW93 802 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 DHX37Q8IY37 1157 aaKnown RBP9.69□□□□□ -0.86
TDP1-210ENST00000554976 SLC35F6Q8N357 371 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 ZNF516Q92618 1163 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 RNPEPQ9H4A4 650 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 PTPRHQ9HD43 1115 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 ZNHIT6Q9NWK9 470 aaKnown RBP9.69□□□□□ -0.86
TDP1-210ENST00000554976 APEX2Q9UBZ4 518 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 SALL4Q9UJQ4 1053 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 MANSC4A6NHS7 340 aaPredicted RBP9.69□□□□□ -0.86
TDP1-210ENST00000554976 BTNL10A8MVZ5 291 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 RFX1P22670 979 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 GTF2H1P32780 548 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 ADCYAP1R1P41586 468 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 HUNKP57058 714 aa9.69□□□□□ -0.86
TDP1-210ENST00000554976 CYP27A1Q02318 531 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms