RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 DENND4AQ7Z401 1863 aa12.31□□□□□ -0.44
SHMT2-216ENST00000554975 NOP56O00567 594 aaKnown RBP12.31□□□□□ -0.44
SHMT2-216ENST00000554975 ZSCAN12O43309 604 aa12.31□□□□□ -0.44
SHMT2-216ENST00000554975 TPM1P09493 284 aa12.31□□□□□ -0.44
SHMT2-216ENST00000554975 TGFB3P10600 412 aa12.31□□□□□ -0.44
SHMT2-216ENST00000554975 GNAT1P11488 350 aa12.31□□□□□ -0.44
SHMT2-216ENST00000554975 MRPS9P82933 396 aaKnown RBP12.31□□□□□ -0.44
SHMT2-216ENST00000554975 PTGDRQ13258 359 aa12.31□□□□□ -0.44
SHMT2-216ENST00000554975 GLIPR1L2Q4G1C9 344 aa12.31□□□□□ -0.44
SHMT2-216ENST00000554975 CEP135Q66GS9 1140 aa12.31□□□□□ -0.44
SHMT2-216ENST00000554975 PIK3AP1Q6ZUJ8 805 aa12.31□□□□□ -0.44
SHMT2-216ENST00000554975 CCAR2Q8N163 923 aaKnown RBP12.31□□□□□ -0.44
SHMT2-216ENST00000554975 KIF18AQ8NI77 898 aa12.31□□□□□ -0.44
SHMT2-216ENST00000554975 MAP3K20Q9NYL2 800 aaKnown RBP12.31□□□□□ -0.44
SHMT2-216ENST00000554975 NFE2L3Q9Y4A8 694 aa12.31□□□□□ -0.44
SHMT2-216ENST00000554975 MAP1BP46821 2468 aaKnown RBP12.3□□□□□ -0.44
SHMT2-216ENST00000554975 VWA3AA6NCI4 1184 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 C2CD4DB7Z1M9 353 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 ARHGAP6O43182 974 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 ZNF18P17022 549 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 CDK11BP21127 795 aaKnown RBP12.3□□□□□ -0.44
SHMT2-216ENST00000554975 CCND2P30279 289 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 SP4Q02446 784 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 STIM1Q13586 685 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 TRIM14Q14142 442 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 SPATA1Q5VX52 437 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 METTL7BQ6UX53 244 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 TSHZ1Q6ZSZ6 1077 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 HEATR3Q7Z4Q2 680 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 NPAS4Q8IUM7 802 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 C17orf53Q8N3J3 647 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-216ENST00000554975 SAMD3Q8N6K7 520 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 DNAJB3Q8WWF6 145 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 RMDN1Q96DB5 314 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 NAP1L4Q99733 375 aaKnown RBP12.3□□□□□ -0.44
SHMT2-216ENST00000554975 C2orf16Q68DN1 1984 aa12.3□□□□□ -0.44
SHMT2-216ENST00000554975 FSCN2O14926 492 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 ASGR2P07307 311 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 IBSPP21815 317 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-216ENST00000554975 STAT6P42226 847 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 TECP42680 631 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 NAPAP54920 295 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 DPYDQ12882 1025 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 NONOQ15233 471 aaKnown RBP eCLIP12.29□□□□□ -0.44
SHMT2-216ENST00000554975 ZNF174Q15697 407 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 MARCH8Q5T0T0 291 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 SPECC1LQ69YQ0 1117 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 ASTLQ6HA08 431 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-216ENST00000554975 ANKRD54Q6NXT1 300 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 LLGL2Q6P1M3 1020 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 USP17L6PQ6QN14 398 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 DTHD1Q6ZMT9 781 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 NYAP1Q6ZVC0 841 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 PDILTQ8N807 584 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 RASSF8Q8NHQ8 419 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 MICAL1Q8TDZ2 1067 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 PAGE5Q96GU1 130 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 NAA15Q9BXJ9 866 aaKnown RBP12.29□□□□□ -0.44
SHMT2-216ENST00000554975 RAB34Q9BZG1 259 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 CCSER1Q9C0I3 900 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 ZMYND12Q9H0C1 365 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 GLT8D2Q9H1C3 349 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 SORCS3Q9UPU3 1222 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 NRCAMQ92823 1304 aa12.29□□□□□ -0.44
SHMT2-216ENST00000554975 A0A087WWV3 80 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 FAM205CA6NFA0 338 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 PRR29P0C7W0 189 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 MCM7P33993 719 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 MRPS6P82932 125 aaKnown RBP12.28□□□□□ -0.44
SHMT2-216ENST00000554975 GRIN1Q05586 938 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 KCNB1Q14721 858 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 E2F4Q16254 413 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 SPECC1Q5M775 1068 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 PLPP4Q5VZY2 271 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 CWF19L1Q69YN2 538 aaKnown RBP12.28□□□□□ -0.44
SHMT2-216ENST00000554975 WWC2Q6AWC2 1192 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 TAF2Q6P1X5 1199 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 TMEM184AQ6ZMB5 413 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 NOC3LQ8WTT2 800 aaKnown RBP12.28□□□□□ -0.44
SHMT2-216ENST00000554975 CCDC51Q96ER9 411 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 INPP4AQ96PE3 977 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-216ENST00000554975 TMX1Q9H3N1 280 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 POMKQ9H5K3 350 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 PSTPIP2Q9H939 334 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 FANCLQ9NW38 375 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 ZNF215Q9UL58 517 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-216ENST00000554975 ZFHX4Q86UP3 3567 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 FRMPD4Q14CM0 1322 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 ITIH6Q6UXX5 1313 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 PHLPP2Q6ZVD8 1323 aa12.28□□□□□ -0.44
SHMT2-216ENST00000554975 MBLAC1A4D2B0 266 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-216ENST00000554975 HIDE1A8MVS5 230 aa12.27□□□□□ -0.45
SHMT2-216ENST00000554975 SPATA31C2B4DYI2 1134 aa12.27□□□□□ -0.45
SHMT2-216ENST00000554975 M0R2N6 131 aa12.27□□□□□ -0.45
SHMT2-216ENST00000554975 RIOK3O14730 519 aaKnown RBP12.27□□□□□ -0.45
SHMT2-216ENST00000554975 CTIFO43310 598 aaKnown RBP12.27□□□□□ -0.45
SHMT2-216ENST00000554975 SLC26A4O43511 780 aa12.27□□□□□ -0.45
SHMT2-216ENST00000554975 PI15O43692 258 aa12.27□□□□□ -0.45
SHMT2-216ENST00000554975 STX10O60499 249 aa12.27□□□□□ -0.45
SHMT2-216ENST00000554975 MGEA5O60502 916 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms