RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 TADA3O75528 432 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 ABL1P00519 1130 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 NR3C1P04150 777 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 SERPING1P05155 500 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 MYBP10242 640 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 EPB41P11171 864 aaKnown RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 PRLRP16471 622 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 ANXA13P27216 316 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 CCND2P30279 289 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 ICAM3P32942 547 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 GPC1P35052 558 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 PSMC2P35998 433 aaKnown RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 EPS15P42566 896 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 RARRES1P49788 294 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 JAK3P52333 1124 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 VAV2P52735 878 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 PSMC5P62195 406 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 UBXN2AP68543 259 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 GTF2BQ00403 316 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 AMPD2Q01433 879 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 MAPK7Q13164 816 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 ITGB3BPQ13352 177 aaPredicted RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 MTMR1Q13613 665 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 BAATQ14032 418 aaPredicted RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 GRIN2CQ14957 1233 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 ZNF569Q5MCW4 686 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 C10orf76Q5T2E6 689 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 PAPD7Q5XG87 772 aaKnown RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 HGSNATQ68CP4 663 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 LBX2Q6XYB7 198 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 NLRX1Q86UT6 975 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 FAM178BQ8IXR5 827 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 SMAP1Q8IYB5 467 aaPredicted RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 DAW1Q8N136 415 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 TXLNBQ8N3L3 684 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 RNF10Q8N5U6 811 aaKnown RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 CEP112Q8N8E3 955 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 CHST13Q8NET6 341 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 DNERQ8NFT8 737 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 NLGN2Q8NFZ4 835 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 IL31RAQ8NI17 732 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 TRPM4Q8TD43 1214 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 NSUN6Q8TEA1 469 aaKnown RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 LRRN4Q8WUT4 740 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 ZKSCAN4Q969J2 545 aaPredicted RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 ATG4CQ96DT6 458 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 CDHR1Q96JP9 859 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 CCDC42Q96M95 316 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 PCMTD1Q96MG8 357 aaPredicted RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 INPP4AQ96PE3 977 aaPredicted RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 IWS1Q96ST2 819 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 NTPCRQ9BSD7 190 aaKnown RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 GANQ9H2C0 597 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 SUV39H2Q9H5I1 410 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 MMRN2Q9H8L6 949 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 C17orf75Q9HAS0 396 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 RRAGCQ9HB90 399 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 LZTFL1Q9NQ48 299 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 ADARB2Q9NS39 739 aaKnown RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 RNF146Q9NTX7 359 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 TMOD4Q9NZQ9 345 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 ARHGAP20Q9P2F6 1191 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 LARSQ9P2J5 1176 aaKnown RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 ARMCX3Q9UH62 379 aaPredicted RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 KCNG1Q9UIX4 513 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 SCAF8Q9UPN6 1271 aaKnown RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 USP20Q9Y2K6 914 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 GPSM3Q9Y4H4 160 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 RIPK3Q9Y572 518 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 BZW2Q9Y6E2 419 aaKnown RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 SCN4AP35499 1836 aa6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 GOLGB1Q14789 3259 aaKnown RBP6.59□□□□□ -1.35
VIPAS39-204ENST00000553576 ZMYM2Q9UBW7 1377 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 SSC5DA1L4H1 1573 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 A0A0U1RQJ8 604 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 ANO9A1A5B4 782 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 ARHGEF35A5YM69 484 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 LRRC53A6NM62 1247 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 SFI1A8K8P3 1242 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 WDR64B1ANS9 1081 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 ZNF263O14978 683 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 ATP8B1O43520 1251 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 USO1O60763 962 aaKnown RBP6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 ATP9AO75110 1047 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 HIP1RO75146 1068 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 AKAP3O75969 853 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 ATG7O95352 703 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 IPO7O95373 1038 aaKnown RBP6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 GCNT3O95395 438 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 AFPP02771 609 aaKnown RBP6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 TUBBP07437 444 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 XRCC5P13010 732 aaKnown RBP6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 PLS3P13797 630 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 H2AFXP16104 143 aaPredicted RBP6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 SCP2P22307 547 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 NMT1P30419 496 aaKnown RBP6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 PRKCIP41743 596 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 HMGCS2P54868 508 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 RTP1P59025 263 aa6.58□□□□□ -1.36
VIPAS39-204ENST00000553576 ENPEPQ07075 957 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms