RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 COL4A4P53420 1690 aaPredicted RBP15.57■□□□□ 0.08
PTCH1-226ENST00000553011 SLC16A4O15374 487 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 FAM13AO94988 1023 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 FGFR1P11362 822 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 AXLP30530 894 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 LONRF3Q496Y0 759 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 PAN2Q504Q3 1202 aaKnown RBP15.57■□□□□ 0.08
PTCH1-226ENST00000553011 ADALQ6DHV7 355 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 PPP4R3CPQ6ZMV5 832 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 DYMQ7RTS9 669 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 ZNF598Q86UK7 904 aaKnown RBP15.57■□□□□ 0.08
PTCH1-226ENST00000553011 PIAS4Q8N2W9 510 aaPredicted RBP15.57■□□□□ 0.08
PTCH1-226ENST00000553011 STAMQ92783 540 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 ZHX3Q9H4I2 956 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 ELAC1Q9H777 363 aaKnown RBP15.57■□□□□ 0.08
PTCH1-226ENST00000553011 C17orf75Q9HAS0 396 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 KMT5AQ9NQR1 393 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 TSHZ2Q9NRE2 1034 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 FAM105AQ9NUU6 356 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 RNF19AQ9NV58 838 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 MTMR10Q9NXD2 777 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 ARHGAP28Q9P2N2 729 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 ODF2LQ9ULJ1 636 aa15.57■□□□□ 0.08
PTCH1-226ENST00000553011 TRANK1O15050 2925 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 MEIS3P2A8K0S8 358 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 ACKR2O00590 384 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 POLR2DO15514 142 aaKnown RBP15.56■□□□□ 0.08
PTCH1-226ENST00000553011 TBCAO75347 108 aaKnown RBP15.56■□□□□ 0.08
PTCH1-226ENST00000553011 ZNF131P52739 623 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 EFNA5P52803 228 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 NCBP1Q09161 790 aaKnown RBP15.56■□□□□ 0.08
PTCH1-226ENST00000553011 BTG3Q14201 252 aaPredicted RBP15.56■□□□□ 0.08
PTCH1-226ENST00000553011 GRIN2CQ14957 1233 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 MAPK6Q16659 721 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 FAM187BQ17R55 369 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 NOTUMQ6P988 496 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 TAS1R3Q7RTX0 852 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 MYCT1Q8N699 235 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 SPIRE2Q8WWL2 714 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 DDX12PQ92771 950 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 LPPQ93052 612 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 PRIMPOLQ96LW4 560 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 TRAIPQ9BWF2 469 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 EIF2AQ9BY44 585 aaKnown RBP15.56■□□□□ 0.08
PTCH1-226ENST00000553011 MTUS1Q9ULD2 1270 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 RBM19Q9Y4C8 960 aaKnown RBP15.56■□□□□ 0.08
PTCH1-226ENST00000553011 PCDHB2Q9Y5E7 798 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 CNTNAP2Q9UHC6 1331 aa15.56■□□□□ 0.08
PTCH1-226ENST00000553011 TDRD15B5MCY1 1934 aaKnown RBP15.56■□□□□ 0.08
PTCH1-226ENST00000553011 PHLPP2Q6ZVD8 1323 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 A0A1B0GVL5 298 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 TBKBP1A7MCY6 615 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 K7ERI5 159 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 PFKFB1P16118 471 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 CMA1P23946 247 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 RAB27AP51159 221 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 PRPF4BQ13523 1007 aaKnown RBP15.55■□□□□ 0.08
PTCH1-226ENST00000553011 CLLU1OSQ5K130 101 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 NT5DC1Q5TFE4 455 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 FIBCD1Q8N539 461 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 IQUBQ8NA54 791 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 TMEM161BQ8NDZ6 487 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 DNAJC19Q96DA6 116 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 CCDC51Q96ER9 411 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 GUCD1Q96NT3 240 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 NTPCRQ9BSD7 190 aaKnown RBP15.55■□□□□ 0.08
PTCH1-226ENST00000553011 C17orf80Q9BSJ5 609 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 PRDM12Q9H4Q4 367 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 PDZD7Q9H5P4 517 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 TMEM134Q9H6X4 195 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 PARVGQ9HBI0 331 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 RNF216Q9NWF9 866 aaPredicted RBP15.55■□□□□ 0.08
PTCH1-226ENST00000553011 CHMP5Q9NZZ3 219 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 LARSQ9P2J5 1176 aaKnown RBP15.55■□□□□ 0.08
PTCH1-226ENST00000553011 KCNH3Q9ULD8 1083 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 CITO14578 2027 aa15.55■□□□□ 0.08
PTCH1-226ENST00000553011 A0A1B0GUA9 196 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 EPOPA6NHQ4 379 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 ZNF623O75123 536 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 NPTXRO95502 500 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 EOMESO95936 686 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 LINC00271P0C7V0 271 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 SKIP12755 728 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 SMTNP53814 917 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 TMEM132AQ24JP5 1023 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 EEF1DP3Q658K8 133 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 CMTR2Q8IYT2 770 aaKnown RBP15.54■□□□□ 0.08
PTCH1-226ENST00000553011 SMG8Q8ND04 991 aaKnown RBP15.54■□□□□ 0.08
PTCH1-226ENST00000553011 HELQQ8TDG4 1101 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 ARNTL2Q8WYA1 636 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 TGS1Q96RS0 853 aaKnown RBP15.54■□□□□ 0.08
PTCH1-226ENST00000553011 TNMDQ9H2S6 317 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 CUEDC2Q9H467 287 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 KBTBD4Q9NVX7 518 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 HCSTQ9UBK5 93 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 HPSEQ9Y251 543 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 HES2Q9Y543 173 aa15.54■□□□□ 0.08
PTCH1-226ENST00000553011 MRPL42Q9Y6G3 142 aaKnown RBP15.54■□□□□ 0.08
PTCH1-226ENST00000553011 CDH23Q9H251 3354 aa15.53■□□□□ 0.08
PTCH1-226ENST00000553011 ATG2AQ2TAZ0 1938 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms