RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 PRPF6O94906 941 aaKnown RBP10.52□□□□□ -0.73
LIMA1-211ENST00000552338 CHRNA1P02708 482 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 VTNP04004 478 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 IQCF3P0C7M6 154 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 PRKCSHP14314 528 aaPredicted RBP10.52□□□□□ -0.73
LIMA1-211ENST00000552338 GARTP22102 1010 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 MARSP56192 900 aaKnown RBP10.52□□□□□ -0.73
LIMA1-211ENST00000552338 FKBP3Q00688 224 aaKnown RBP10.52□□□□□ -0.73
LIMA1-211ENST00000552338 MAPK6Q16659 721 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 ZC2HC1CQ53FD0 456 aaPredicted RBP10.52□□□□□ -0.73
LIMA1-211ENST00000552338 SPATA1Q5VX52 437 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 ANKRD40Q6AI12 368 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 ISM2Q6H9L7 571 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 TSHZ1Q6ZSZ6 1077 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 GAS2L3Q86XJ1 694 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 KSR1Q8IVT5 923 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 SMYD4Q8IYR2 804 aaPredicted RBP10.52□□□□□ -0.73
LIMA1-211ENST00000552338 DIS3LQ8TF46 1054 aaKnown RBP10.52□□□□□ -0.73
LIMA1-211ENST00000552338 VTI1AQ96AJ9 217 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 PAWRQ96IZ0 340 aaKnown RBP10.52□□□□□ -0.73
LIMA1-211ENST00000552338 FBXL18Q96ME1 805 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 CEP63Q96MT8 703 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 DUSP9Q99956 384 aaKnown RBP10.52□□□□□ -0.73
LIMA1-211ENST00000552338 TRAIPQ9BWF2 469 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 GCOM2Q9BZD3 368 aaPredicted RBP10.52□□□□□ -0.73
LIMA1-211ENST00000552338 GBP3Q9H0R5 595 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 GZF1Q9H116 711 aaPredicted RBP10.52□□□□□ -0.73
LIMA1-211ENST00000552338 DNAJC25Q9H1X3 360 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 HSD3B7Q9H2F3 369 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 ZHX3Q9H4I2 956 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 MINDY3Q9H8M7 445 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 TRMT13Q9NUP7 481 aaKnown RBP10.52□□□□□ -0.73
LIMA1-211ENST00000552338 TBC1D7Q9P0N9 293 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 TRPV2Q9Y5S1 764 aa10.52□□□□□ -0.73
LIMA1-211ENST00000552338 A0A1B0GUA9 196 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 FSD2A1L4K1 749 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 LRRIQ4A6NIV6 560 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 DCDC2CA8MYV0 355 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 CALUO43852 315 aaPredicted RBP10.51□□□□□ -0.73
LIMA1-211ENST00000552338 SRGAP2CP0DJJ0 459 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 CKBP12277 381 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 PMS1P54277 932 aaKnown RBP10.51□□□□□ -0.73
LIMA1-211ENST00000552338 KCNA1Q09470 495 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 FAAP100Q0VG06 881 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 BFSP2Q13515 415 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 UVSSAQ2YD98 709 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 FAM47CQ5HY64 1035 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 SLFN12LQ6IEE8 588 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 SLC39A4Q6P5W5 647 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 FILIP1Q7Z7B0 1213 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 DHX40Q8IX18 779 aaKnown RBP10.51□□□□□ -0.73
LIMA1-211ENST00000552338 CCDC155Q8N6L0 562 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 TMEM40Q8WWA1 233 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 NELFBQ8WX92 580 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 ACO2Q99798 780 aaKnown RBP10.51□□□□□ -0.73
LIMA1-211ENST00000552338 MKNK1Q9BUB5 465 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 MRPL4Q9BYD3 311 aaKnown RBP10.51□□□□□ -0.73
LIMA1-211ENST00000552338 TRPV6Q9H1D0 765 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 CDHR5Q9HBB8 845 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 CHST12Q9NRB3 414 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 TBX21Q9UL17 535 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 TNFSF13BQ9Y275 285 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 CDY2AQ9Y6F7 541 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 CITO14578 2027 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 CNTNAP2Q9UHC6 1331 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 ANK1P16157 1881 aa10.51□□□□□ -0.73
LIMA1-211ENST00000552338 M0QZ92 97 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 TOM1L1O75674 476 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 MYCP01106 439 aaPredicted RBP10.5□□□□□ -0.73
LIMA1-211ENST00000552338 EDN1P05305 212 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 PRKCBP05771 671 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 ADRB2P07550 413 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 ZNF18P17022 549 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 EN2P19622 333 aaPredicted RBP10.5□□□□□ -0.73
LIMA1-211ENST00000552338 ADSSP30520 456 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 HOXA11P31270 313 aaPredicted RBP10.5□□□□□ -0.73
LIMA1-211ENST00000552338 MYL5Q02045 173 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 MCL1Q07820 350 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 STRN3Q13033 797 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 HSP90AA2PQ14568 343 aaPredicted RBP10.5□□□□□ -0.73
LIMA1-211ENST00000552338 KIZQ2M2Z5 673 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 FBXO47Q5MNV8 452 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 ZNF618Q5T7W0 954 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 LRRC55Q6ZSA7 311 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 HS2ST1Q7LGA3 356 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 TET1Q8NFU7 2136 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 NOC3LQ8WTT2 800 aaKnown RBP10.5□□□□□ -0.73
LIMA1-211ENST00000552338 PPP1R13LQ8WUF5 828 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 NLRP7Q8WX94 980 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 CCDC51Q96ER9 411 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 NLRP4Q96MN2 994 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 KIFC3Q9BVG8 833 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 FAM49AQ9H0Q0 323 aaPredicted RBP10.5□□□□□ -0.73
LIMA1-211ENST00000552338 THAP9Q9H5L6 903 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 CBX8Q9HC52 389 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 AGPAT3Q9NRZ7 376 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 TRIP11Q15643 1979 aa10.5□□□□□ -0.73
LIMA1-211ENST00000552338 PDCD11Q14690 1871 aaKnown RBP10.49□□□□□ -0.73
LIMA1-211ENST00000552338 A0A0B4J269 797 aa10.49□□□□□ -0.73
LIMA1-211ENST00000552338 KIAA0355O15063 1070 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms