RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 SEMA7AO75326 666 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 GSNP06396 782 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 IFIT2P09913 472 aaKnown RBP4.68□□□□□ -1.66
LIMA1-208ENST00000551691 TM4SF4P48230 202 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 EIF5P55010 431 aaKnown RBP4.68□□□□□ -1.66
LIMA1-208ENST00000551691 SRSF3P84103 164 aaKnown RBP4.68□□□□□ -1.66
LIMA1-208ENST00000551691 PAK1Q13153 545 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 NMIQ13287 307 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-208ENST00000551691 SNW1Q13573 536 aaKnown RBP4.68□□□□□ -1.66
LIMA1-208ENST00000551691 NR0B2Q15466 257 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 SLC4A8Q2Y0W8 1093 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 SYCP2LQ5T4T6 812 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 FAM102BQ5T8I3 360 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 TMC3Q7Z5M5 1100 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 NXPE1Q8N323 547 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 ZNF513Q8N8E2 541 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-208ENST00000551691 TTC8Q8TAM2 541 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 CD99L2Q8TCZ2 262 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 AHCYL2Q96HN2 611 aaKnown RBP4.68□□□□□ -1.66
LIMA1-208ENST00000551691 SCLYQ96I15 445 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 CHAMP1Q96JM3 812 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 SNX27Q96L92 541 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 THG1LQ9NWX6 298 aaKnown RBP4.68□□□□□ -1.66
LIMA1-208ENST00000551691 TERF2IPQ9NYB0 399 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 EDC4Q6P2E9 1401 aaKnown RBP4.68□□□□□ -1.66
LIMA1-208ENST00000551691 TTC28Q96AY4 2481 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 NPC1L1Q9UHC9 1359 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 TJP1Q07157 1748 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 ZNF891A8MT65 544 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-208ENST00000551691 H0Y8X5 98 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 PPIP5K2O43314 1243 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 SIGLEC6O43699 453 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 FOXD2O60548 495 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-208ENST00000551691 PEX10O60683 326 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 GLRX3O76003 335 aaKnown RBP4.67□□□□□ -1.66
LIMA1-208ENST00000551691 MT-CO1P00395 513 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 CFBP00751 764 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 A1BGP04217 495 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 SCG5P05408 212 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 BPIP17213 487 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 ID4P47928 161 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 PIP4K2AP48426 406 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-208ENST00000551691 LSSP48449 732 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 DNM2P50570 870 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 GPR85P60893 370 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 CHRNEQ04844 493 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 DUSP4Q13115 394 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 KCNAB2Q13303 367 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 TCIRG1Q13488 830 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 ZRSR2Q15696 482 aaKnown RBP4.67□□□□□ -1.66
LIMA1-208ENST00000551691 CLUL1Q15846 466 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 NTRK3Q16288 839 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 KIZQ2M2Z5 673 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 SKOR2Q2VWA4 1001 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-208ENST00000551691 TCERG1LQ5VWI1 586 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 CXorf57Q6NSI4 855 aaKnown RBP4.67□□□□□ -1.66
LIMA1-208ENST00000551691 ZNF530Q6P9A1 599 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-208ENST00000551691 KCNT2Q6UVM3 1135 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 TSHZ1Q6ZSZ6 1077 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 CEP128Q6ZU80 1094 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 KIF18BQ86Y91 864 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 SPPL2CQ8IUH8 684 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 TCEAL8Q8IYN2 117 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 ZDHHC14Q8IZN3 488 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 SAMD3Q8N6K7 520 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 ANKS4BQ8N8V4 417 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.67□□□□□ -1.66
LIMA1-208ENST00000551691 LINC01599Q8WXQ3 324 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 SCYL1Q96KG9 808 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 KCNC2Q96PR1 638 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 PLCD4Q9BRC7 762 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 ARNT2Q9HBZ2 717 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 MKS1Q9NXB0 559 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 COQ6Q9Y2Z9 468 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 ADAMTS20P59510 1910 aa4.67□□□□□ -1.66
LIMA1-208ENST00000551691 SNED1Q8TER0 1413 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 TRBV23OR9-2A0A075B6M9 112 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 PRAMEF22A3QJZ6 481 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 KLRG2A4D1S0 409 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-208ENST00000551691 OR14I1A6ND48 311 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 C2orf71A6NGG8 1288 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 CBX4O00257 560 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 GABRDO14764 452 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 XPOTO43592 962 aaKnown RBP4.66□□□□□ -1.66
LIMA1-208ENST00000551691 PRKD3O94806 890 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 CAMTA2O94983 1202 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 PRAMEF1O95521 474 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 LDHAP00338 332 aaKnown RBP4.66□□□□□ -1.66
LIMA1-208ENST00000551691 F2P00734 622 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 THBDP07204 575 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 LTBRP36941 435 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 ADCYAP1R1P41586 468 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 TNNT2P45379 298 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-208ENST00000551691 SESN3P58005 492 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 MAP3K12Q12852 859 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 PICALMQ13492 652 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 SLC14A2Q15849 920 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 LONRF3Q496Y0 759 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 MINDY4Q4G0A6 757 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 ZNF385BQ569K4 471 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms