RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 HSP90AB3PQ58FF7 597 aa4.62□□□□□ -1.67
LIMA1-206ENST00000550611 UBE2Q1Q7Z7E8 422 aa4.62□□□□□ -1.67
LIMA1-206ENST00000550611 TBC1D16Q8TBP0 767 aa4.62□□□□□ -1.67
LIMA1-206ENST00000550611 GDF15Q99988 308 aa4.62□□□□□ -1.67
LIMA1-206ENST00000550611 ISCA1Q9BUE6 129 aa4.62□□□□□ -1.67
LIMA1-206ENST00000550611 ARHGAP39Q9C0H5 1083 aa4.62□□□□□ -1.67
LIMA1-206ENST00000550611 TRMT112Q9UI30 125 aaKnown RBP4.62□□□□□ -1.67
LIMA1-206ENST00000550611 ZMYND8Q9ULU4 1186 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-206ENST00000550611 NR2E3Q9Y5X4 410 aa4.62□□□□□ -1.67
LIMA1-206ENST00000550611 SH3TC1Q8TE82 1336 aa4.62□□□□□ -1.67
LIMA1-206ENST00000550611 RBBP6Q7Z6E9 1792 aaKnown RBP4.62□□□□□ -1.67
LIMA1-206ENST00000550611 ZNF609O15014 1411 aa4.62□□□□□ -1.67
LIMA1-206ENST00000550611 A0A1W2PPC1 479 aa4.61□□□□□ -1.67
LIMA1-206ENST00000550611 ZNF16P17020 682 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-206ENST00000550611 EIF2S2P20042 333 aaKnown RBP4.61□□□□□ -1.67
LIMA1-206ENST00000550611 STAT5AP42229 794 aa4.61□□□□□ -1.67
LIMA1-206ENST00000550611 MLLT6P55198 1093 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-206ENST00000550611 NANOS3P60323 173 aaKnown RBP4.61□□□□□ -1.67
LIMA1-206ENST00000550611 RPS8P62241 208 aaKnown RBP4.61□□□□□ -1.67
LIMA1-206ENST00000550611 TAGLNQ01995 201 aaKnown RBP4.61□□□□□ -1.67
LIMA1-206ENST00000550611 SP3Q02447 781 aa4.61□□□□□ -1.67
LIMA1-206ENST00000550611 GRB10Q13322 594 aa4.61□□□□□ -1.67
LIMA1-206ENST00000550611 ZYXQ15942 572 aaKnown RBP4.61□□□□□ -1.67
LIMA1-206ENST00000550611 IGFL4Q6B9Z1 124 aa4.61□□□□□ -1.67
LIMA1-206ENST00000550611 UNC5AQ6ZN44 842 aa4.61□□□□□ -1.67
LIMA1-206ENST00000550611 AGBL3Q8NEM8 1001 aa4.61□□□□□ -1.67
LIMA1-206ENST00000550611 MRRFQ96E11 262 aaKnown RBP4.61□□□□□ -1.67
LIMA1-206ENST00000550611 FAM89AQ96GI7 184 aa4.61□□□□□ -1.67
LIMA1-206ENST00000550611 ERO1AQ96HE7 468 aa4.61□□□□□ -1.67
LIMA1-206ENST00000550611 CLIC6Q96NY7 704 aa4.61□□□□□ -1.67
LIMA1-206ENST00000550611 EYA3Q99504 573 aa4.61□□□□□ -1.67
LIMA1-206ENST00000550611 CDX2Q99626 313 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-206ENST00000550611 TRIM8Q9BZR9 551 aa4.61□□□□□ -1.67
LIMA1-206ENST00000550611 KLHL25Q9H0H3 589 aa4.61□□□□□ -1.67
LIMA1-206ENST00000550611 SEC61A2Q9H9S3 476 aa4.61□□□□□ -1.67
LIMA1-206ENST00000550611 TNFRSF18Q9Y5U5 241 aa4.61□□□□□ -1.67
LIMA1-206ENST00000550611 UNCXA6NJT0 531 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 CHL1O00533 1208 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 NARSO43776 548 aaKnown RBP4.6□□□□□ -1.67
LIMA1-206ENST00000550611 B4GALT4O60513 344 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 GUCY2CP25092 1073 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 MCM7P33993 719 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 INHBCP55103 352 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 AMPD2Q01433 879 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 SREBF2Q12772 1141 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 AIMP1Q12904 312 aaKnown RBP4.6□□□□□ -1.67
LIMA1-206ENST00000550611 NFATC3Q12968 1075 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 DPY19L1Q2PZI1 675 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 LRIT3Q3SXY7 679 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 LDLRAD1Q5T700 205 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 HS2ST1Q7LGA3 356 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 MILR1Q7Z6M3 343 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 RIOX2Q8IUF8 465 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 RBBP8NLQ8NC74 664 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-206ENST00000550611 PLBD2Q8NHP8 589 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 MAFAQ8NHW3 353 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-206ENST00000550611 WRNIP1Q96S55 665 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 HAUS7Q99871 368 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 GBP3Q9H0R5 595 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 BCL11AQ9H165 835 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 BARX1Q9HBU1 254 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-206ENST00000550611 FAM86C1Q9NVL1 165 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 FTSJ1Q9UET6 329 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 TSPYL4Q9UJ04 414 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 GGT7Q9UJ14 662 aa4.6□□□□□ -1.67
LIMA1-206ENST00000550611 BDP1A6H8Y1 2624 aa4.59□□□□□ -1.67
LIMA1-206ENST00000550611 VAMP4O75379 141 aa4.59□□□□□ -1.67
LIMA1-206ENST00000550611 THBDP07204 575 aa4.59□□□□□ -1.67
LIMA1-206ENST00000550611 KRT24Q2M2I5 525 aa4.59□□□□□ -1.67
LIMA1-206ENST00000550611 ARHGEF39Q8N4T4 335 aa4.59□□□□□ -1.67
LIMA1-206ENST00000550611 USP38Q8NB14 1042 aa4.59□□□□□ -1.67
LIMA1-206ENST00000550611 ADCY4Q8NFM4 1077 aa4.59□□□□□ -1.67
LIMA1-206ENST00000550611 ZCCHC14Q8WYQ9 949 aaKnown RBP4.59□□□□□ -1.67
LIMA1-206ENST00000550611 RCC1LQ96I51 464 aaKnown RBP4.59□□□□□ -1.67
LIMA1-206ENST00000550611 ZBED3Q96IU2 234 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-206ENST00000550611 CLMNQ96JQ2 1002 aa4.59□□□□□ -1.67
LIMA1-206ENST00000550611 MMP19Q99542 508 aa4.59□□□□□ -1.67
LIMA1-206ENST00000550611 HTATIP2Q9BUP3 242 aa4.59□□□□□ -1.67
LIMA1-206ENST00000550611 MYOZ2Q9NPC6 264 aa4.59□□□□□ -1.67
LIMA1-206ENST00000550611 MARCH2Q9P0N8 246 aa4.59□□□□□ -1.67
LIMA1-206ENST00000550611 CGGBP1Q9UFW8 167 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-206ENST00000550611 ADAM29Q9UKF5 820 aa4.59□□□□□ -1.67
LIMA1-206ENST00000550611 ZFR2Q9UPR6 939 aaKnown RBP4.59□□□□□ -1.67
LIMA1-206ENST00000550611 NUP98P52948 1817 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 COL4A1P02462 1669 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 C22orf46C9J442 243 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 WNT10BO00744 389 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 PPM1BO75688 479 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 UFL1O94874 794 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 CNOT4O95628 575 aaKnown RBP4.58□□□□□ -1.68
LIMA1-206ENST00000550611 HOXB7P09629 217 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 CCL5P13501 91 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 CTGFP29279 349 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 TMPOP42166 694 aaKnown RBP4.58□□□□□ -1.68
LIMA1-206ENST00000550611 GJA8P48165 433 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 MMP14P50281 582 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 RIPK4P57078 832 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 NRN1LQ496H8 165 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 DACT2Q5SW24 774 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 MROH9Q5TGP6 573 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms