RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 HERC4Q5GLZ8 1057 aaPredicted RBP12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 ANKRD54Q6NXT1 300 aa12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 MCPH1Q8NEM0 835 aa12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 FBXO18Q8NFZ0 1043 aa12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 KHSRPQ92945 711 aaKnown RBP eCLIP12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 IGSF21Q96ID5 467 aa12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 POLR3CQ9BUI4 534 aaPredicted RBP12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 RSAD1Q9HA92 442 aa12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 HCSTQ9UBK5 93 aa12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 SSX2IPQ9Y2D8 614 aa12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 KIF3AQ9Y496 699 aa12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 USP15Q9Y4E8 981 aaPredicted RBP12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 C2orf71A6NGG8 1288 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 INO80B-WBP1J3KQ70 363 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 NR1I2O75469 434 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 CXCL14O95715 111 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 GALTP07902 379 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 ITGA4P13612 1032 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 MCM7P33993 719 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 ARL2P36404 184 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 ITIH3Q06033 890 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 CBX2Q14781 532 aaPredicted RBP12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 CES5AQ6NT32 575 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 PPFIBP1Q86W92 1011 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 RNF135Q8IUD6 432 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 CCDC83Q8IWF9 413 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 VPS52Q8N1B4 723 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 SUSD6Q92537 303 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 LPPQ93052 612 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 NECTIN4Q96NY8 510 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 NRDE2Q9H7Z3 1164 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 MINDY3Q9H8M7 445 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 C11orf16Q9NQ32 467 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 DBR1Q9UK59 544 aaKnown RBP12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 NOL7Q9UMY1 257 aaKnown RBP12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 INPP5FQ9Y2H2 1132 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 PCDHGC5Q9Y5F6 944 aa12.09□□□□□ -0.47
VTI1BP3-201ENST00000550220 HIDE1A8MVS5 230 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 LOC730098B7Z3J9 87 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 ZBTB39O15060 712 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 DTNBO60941 627 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 OR52Z1P0C646 297 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 CTSAP10619 480 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 ATP2B1P20020 1258 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 PBX3P40426 434 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 HAUS3Q68CZ6 603 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 AGMOQ6ZNB7 445 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 CATSPER3Q86XQ3 398 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 NOSTRINQ8IVI9 506 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 FAM122AQ96E09 287 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 PRIMPOLQ96LW4 560 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 EMILIN2Q9BXX0 1053 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 RAB34Q9BZG1 259 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 TRIM6Q9C030 488 aaPredicted RBP12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 ZBP1Q9H171 429 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 CSRNP2Q9H175 543 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 S1PR5Q9H228 398 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 XPNPEP1Q9NQW7 623 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 DZANK1Q9NVP4 752 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 FAN1Q9Y2M0 1017 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 GIT1Q9Y2X7 761 aa12.08□□□□□ -0.48
VTI1BP3-201ENST00000550220 LOXHD1Q8IVV2 1947 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 A0A1B0GUA9 196 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 NT5C1B-RDH14C9J2C7 533 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 INPPL1O15357 1258 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 TSPAN1O60635 241 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 CLASP2O75122 1294 aaKnown RBP12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 SPATA31C1P0DKV0 1188 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 RPA1P27694 616 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 CA8P35219 290 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 FOSBP53539 338 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 ST3GAL1Q11201 340 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 PDIA5Q14554 519 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 ZNF174Q15697 407 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 LONRF3Q496Y0 759 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 FNDC1Q4ZHG4 1894 aaPredicted RBP12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 TTC38Q5R3I4 469 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 UBXN11Q5T124 520 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 VN1R2Q8NFZ6 395 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 PIGOQ8TEQ8 1089 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 MFSD14AQ96MC6 490 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 RIPOR3Q96MK2 946 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 C2orf40Q9H1Z8 148 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 KCNH6Q9H252 994 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 TMEM60Q9H2L4 133 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 ADAM7Q9H2U9 754 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 BMP2KQ9NSY1 1161 aaPredicted RBP12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 DPP7Q9UHL4 492 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 NR2E1Q9Y466 385 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 IPPQ9Y573 584 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 HCFC2Q9Y5Z7 792 aa12.07□□□□□ -0.48
VTI1BP3-201ENST00000550220 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.06□□□□□ -0.48
VTI1BP3-201ENST00000550220 FAM86C2PA6NEL3 165 aa12.06□□□□□ -0.48
VTI1BP3-201ENST00000550220 POTEMA6NI47 508 aa12.06□□□□□ -0.48
VTI1BP3-201ENST00000550220 LAD1O00515 517 aa12.06□□□□□ -0.48
VTI1BP3-201ENST00000550220 ST18O60284 1047 aa12.06□□□□□ -0.48
VTI1BP3-201ENST00000550220 GLRA2P23416 452 aa12.06□□□□□ -0.48
VTI1BP3-201ENST00000550220 PLA2G5P39877 138 aa12.06□□□□□ -0.48
VTI1BP3-201ENST00000550220 MTHFRP42898 656 aa12.06□□□□□ -0.48
VTI1BP3-201ENST00000550220 SLC11A1P49279 550 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms