RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 NOSTRINQ8IVI9 506 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 URGCPQ8TCY9 931 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 CPB2Q96IY4 423 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 POP1Q99575 1024 aaKnown RBP18.16■□□□□ 0.5
VPS29-207ENST00000549970 POLR3FQ9H1D9 316 aaPredicted RBP18.16■□□□□ 0.5
VPS29-207ENST00000549970 NRDE2Q9H7Z3 1164 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 TUFT1Q9NNX1 390 aa18.16■□□□□ 0.5
VPS29-207ENST00000549970 FSD2A1L4K1 749 aa18.15■□□□□ 0.5
VPS29-207ENST00000549970 C19orf67A6NJJ6 358 aa18.15■□□□□ 0.5
VPS29-207ENST00000549970 TSPAN1O60635 241 aa18.15■□□□□ 0.5
VPS29-207ENST00000549970 GLRA2P23416 452 aa18.15■□□□□ 0.5
VPS29-207ENST00000549970 ORC2Q13416 577 aaPredicted RBP18.15■□□□□ 0.5
VPS29-207ENST00000549970 NBR1Q14596 966 aa18.15■□□□□ 0.5
VPS29-207ENST00000549970 SMC1AQ14683 1233 aaKnown RBP18.15■□□□□ 0.5
VPS29-207ENST00000549970 RABEP1Q15276 862 aa18.15■□□□□ 0.5
VPS29-207ENST00000549970 LRFN3Q9BTN0 628 aa18.15■□□□□ 0.5
VPS29-207ENST00000549970 RSAD1Q9HA92 442 aa18.15■□□□□ 0.5
VPS29-207ENST00000549970 GPRC5CQ9NQ84 441 aa18.15■□□□□ 0.5
VPS29-207ENST00000549970 DNAJB4Q9UDY4 337 aa18.15■□□□□ 0.5
VPS29-207ENST00000549970 NOL7Q9UMY1 257 aaKnown RBP18.15■□□□□ 0.5
VPS29-207ENST00000549970 USP15Q9Y4E8 981 aaPredicted RBP18.15■□□□□ 0.5
VPS29-207ENST00000549970 GALTP07902 379 aa18.14■□□□□ 0.49
VPS29-207ENST00000549970 SRGAP2BP0DMP2 458 aa18.14■□□□□ 0.49
VPS29-207ENST00000549970 XRCC6P12956 609 aaKnown RBP eCLIP18.14■□□□□ 0.49
VPS29-207ENST00000549970 AFF1P51825 1210 aaKnown RBP18.14■□□□□ 0.49
VPS29-207ENST00000549970 MBTD1Q05BQ5 628 aa18.14■□□□□ 0.49
VPS29-207ENST00000549970 PCBP1Q15365 356 aaKnown RBP eCLIP18.14■□□□□ 0.49
VPS29-207ENST00000549970 NOTUMQ6P988 496 aa18.14■□□□□ 0.49
VPS29-207ENST00000549970 POTEGQ6S5H5 508 aa18.14■□□□□ 0.49
VPS29-207ENST00000549970 MRPL10Q7Z7H8 261 aaKnown RBP18.14■□□□□ 0.49
VPS29-207ENST00000549970 ZNF280BQ86YH2 543 aa18.14■□□□□ 0.49
VPS29-207ENST00000549970 IFNLR1Q8IU57 520 aaPredicted RBP18.14■□□□□ 0.49
VPS29-207ENST00000549970 VPS52Q8N1B4 723 aa18.14■□□□□ 0.49
VPS29-207ENST00000549970 SMG8Q8ND04 991 aaKnown RBP18.14■□□□□ 0.49
VPS29-207ENST00000549970 ERMNQ8TAM6 284 aa18.14■□□□□ 0.49
VPS29-207ENST00000549970 POLR3CQ9BUI4 534 aaPredicted RBP18.14■□□□□ 0.49
VPS29-207ENST00000549970 EIF2AQ9BY44 585 aaKnown RBP18.14■□□□□ 0.49
VPS29-207ENST00000549970 C11orf16Q9NQ32 467 aa18.14■□□□□ 0.49
VPS29-207ENST00000549970 CNTNAP2Q9UHC6 1331 aa18.14■□□□□ 0.49
VPS29-207ENST00000549970 C2orf71A6NGG8 1288 aa18.13■□□□□ 0.49
VPS29-207ENST00000549970 ST18O60284 1047 aa18.13■□□□□ 0.49
VPS29-207ENST00000549970 B4GALT3O60512 393 aa18.13■□□□□ 0.49
VPS29-207ENST00000549970 ITGA4P13612 1032 aa18.13■□□□□ 0.49
VPS29-207ENST00000549970 ALADP13716 330 aa18.13■□□□□ 0.49
VPS29-207ENST00000549970 NCLP19338 710 aaKnown RBP18.13■□□□□ 0.49
VPS29-207ENST00000549970 AXLP30530 894 aa18.13■□□□□ 0.49
VPS29-207ENST00000549970 TRAPPC10P48553 1259 aa18.13■□□□□ 0.49
VPS29-207ENST00000549970 SLC11A1P49279 550 aa18.13■□□□□ 0.49
VPS29-207ENST00000549970 POU5F1BQ06416 359 aa18.13■□□□□ 0.49
VPS29-207ENST00000549970 NCBP1Q09161 790 aaKnown RBP18.13■□□□□ 0.49
VPS29-207ENST00000549970 BMS1Q14692 1282 aaKnown RBP18.13■□□□□ 0.49
VPS29-207ENST00000549970 MRPL43Q8N983 215 aaKnown RBP18.13■□□□□ 0.49
VPS29-207ENST00000549970 BCL7CQ8WUZ0 217 aaPredicted RBP18.13■□□□□ 0.49
VPS29-207ENST00000549970 IGSF21Q96ID5 467 aa18.13■□□□□ 0.49
VPS29-207ENST00000549970 FAM193BQ96PV7 902 aaPredicted RBP18.13■□□□□ 0.49
VPS29-207ENST00000549970 NACC1Q96RE7 527 aa18.13■□□□□ 0.49
VPS29-207ENST00000549970 APOL5Q9BWW9 433 aa18.13■□□□□ 0.49
VPS29-207ENST00000549970 IPPQ9Y573 584 aa18.13■□□□□ 0.49
VPS29-207ENST00000549970 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.12■□□□□ 0.49
VPS29-207ENST00000549970 CARNS1A5YM72 827 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 LRRIQ4A6NIV6 560 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 B4GALT5O43286 388 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 DCXO43602 365 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 GPR37L1O60883 481 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 DDHD2O94830 711 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 CXCL14O95715 111 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 POMCP01189 267 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 ARF4P18085 180 aaPredicted RBP18.12■□□□□ 0.49
VPS29-207ENST00000549970 RPA1P27694 616 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 KCNC3Q14003 757 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 AMHR2Q16671 573 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 HAUS3Q68CZ6 603 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 ANKRD54Q6NXT1 300 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 TMEM184AQ6ZMB5 413 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 CNNM3Q8NE01 707 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 MCPH1Q8NEM0 835 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 AUTS2Q8WXX7 1259 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 CCDC51Q96ER9 411 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 APOL6Q9BWW8 343 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 NFKBIZQ9BYH8 718 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 TRIM6Q9C030 488 aaPredicted RBP18.12■□□□□ 0.49
VPS29-207ENST00000549970 ZBP1Q9H171 429 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 CSRNP2Q9H175 543 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 DBR1Q9UK59 544 aaKnown RBP18.12■□□□□ 0.49
VPS29-207ENST00000549970 HES2Q9Y543 173 aa18.12■□□□□ 0.49
VPS29-207ENST00000549970 ARHGEF35A5YM69 484 aa18.11■□□□□ 0.49
VPS29-207ENST00000549970 U2AF2P26368 475 aaKnown RBP eCLIP18.11■□□□□ 0.492e-6■■□□□ 11.9
VPS29-207ENST00000549970 PADI6Q6TGC4 694 aa18.11■□□□□ 0.49
VPS29-207ENST00000549970 DDX53Q86TM3 631 aaKnown RBP18.11■□□□□ 0.49
VPS29-207ENST00000549970 CDR2LQ86X02 465 aaPredicted RBP18.11■□□□□ 0.49
VPS29-207ENST00000549970 C4orf32Q8N8J7 132 aa18.11■□□□□ 0.49
VPS29-207ENST00000549970 TMEM87AQ8NBN3 555 aa18.11■□□□□ 0.49
VPS29-207ENST00000549970 RNF39Q9H2S5 420 aa18.11■□□□□ 0.49
VPS29-207ENST00000549970 UPF2Q9HAU5 1272 aaKnown RBP18.11■□□□□ 0.49
VPS29-207ENST00000549970 KANSL3Q9P2N6 904 aa18.11■□□□□ 0.49
VPS29-207ENST00000549970 HCFC2Q9Y5Z7 792 aa18.11■□□□□ 0.49
VPS29-207ENST00000549970 CLASP2O75122 1294 aaKnown RBP18.1■□□□□ 0.49
VPS29-207ENST00000549970 CTSAP10619 480 aa18.1■□□□□ 0.49
VPS29-207ENST00000549970 CCT6AP40227 531 aaKnown RBP18.1■□□□□ 0.49
VPS29-207ENST00000549970 MLH1P40692 756 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms