RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 PLVAPQ9BX97 442 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 CPVLQ9H3G5 476 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 TLE6Q9H808 572 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 GRPEL1Q9HAV7 217 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 RC3H2Q9HBD1 1191 aaKnown RBP7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 DDX41Q9UJV9 622 aaKnown RBP7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 PCDHA6Q9UN73 950 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 MRPL11Q9Y3B7 192 aaKnown RBP7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 PCDHA8Q9Y5H6 950 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 PCDHA1Q9Y5I3 950 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 GPR179Q6PRD1 2367 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 KMT2EQ8IZD2 1858 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 FAM237AA0A1B0GTK4 181 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 A0A1B0GVL5 298 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 FSD2A1L4K1 749 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 SPDYE3A6NKU9 549 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 NOP56O00567 594 aaKnown RBP7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 GPR37O15354 613 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 CAND2O75155 1236 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 ZNF202O95125 648 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 LGALS2P05162 132 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 MYCLP12524 364 aaPredicted RBP7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 JUNDP17535 347 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 UBA1P22314 1058 aaKnown RBP7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 MCM7P33993 719 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 LONP1P36776 959 aaKnown RBP7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 PRPHP41219 470 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 TOB1P50616 345 aaPredicted RBP7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 ARHGAP4P98171 946 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 ATP2C1P98194 919 aaPredicted RBP7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 KCNMA1Q12791 1236 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 TMEM266Q2M3C6 531 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 QRICH1Q2TAL8 776 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 UVSSAQ2YD98 709 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 HSDL1Q3SXM5 330 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 RESP18Q5W5W9 173 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 DTHD1Q6ZMT9 781 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 TRIM50Q86XT4 487 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 ELOA2Q8IYF1 753 aaPredicted RBP7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 KIAA2013Q8IYS2 634 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 CEP57L1Q8IYX8 460 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 SAMD3Q8N6K7 520 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 CNNM3Q8NE01 707 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 VN1R2Q8NFZ6 395 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 TBC1D5Q92609 795 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 ZFP42Q96MM3 310 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 NAT10Q9H0A0 1025 aaKnown RBP7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 SETD4Q9NVD3 440 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 ANO10Q9NW15 660 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 CCDC39Q9UFE4 941 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 CDH22Q9UJ99 828 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 PCDHB6Q9Y5E3 794 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 ABCB11O95342 1321 aa7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 BAZ2BQ9UIF8 2168 aaKnown RBP7.93□□□□□ -1.14
DEPDC4-208ENST00000549341 BAHCC1Q9P281 2608 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 M0R2N6 131 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 NEMFO60524 1076 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 CCNT1O60563 726 aaKnown RBP7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 EIF3JO75822 258 aaKnown RBP7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 ASGR2P07307 311 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 SRGAP2BP0DMP2 458 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 VSIG8P0DPA2 414 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 PFKFB1P16118 471 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 ATF7P17544 494 aaPredicted RBP7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 TECP42680 631 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 GATMP50440 423 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 NDUFA8P51970 172 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 TPM4P67936 248 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 SP4Q02446 784 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 NPY5RQ15761 445 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 INF2Q27J81 1249 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 LETM2Q2VYF4 491 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 AXDND1Q5T1B0 1012 aaPredicted RBP7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 SPOUT1Q5T280 376 aaKnown RBP7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 JAKMIP3Q5VZ66 844 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 MCF2L2Q86YR7 1114 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 FMR1NBQ8N0W7 255 aaPredicted RBP7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 RASSF8Q8NHQ8 419 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 SPPL3Q8TCT6 385 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 SUSD6Q92537 303 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 AK8Q96MA6 479 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 C16orf70Q9BSU1 422 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 MLXIPQ9HAP2 919 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 FBXO2Q9UK22 296 aaPredicted RBP7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 KCNH3Q9ULD8 1083 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 SORCS3Q9UPU3 1222 aa7.92□□□□□ -1.14
DEPDC4-208ENST00000549341 MICAL3Q7RTP6 2002 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 PKD1L2Q7Z442 2459 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 USP24Q9UPU5 2620 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 C2CD4DB7Z1M9 353 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 GOLGA6L19H0YKK7 550 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 H3BRB1 525 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 GCOM1H8Y6P7 765 aaPredicted RBP7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 PPFIA4O75335 1185 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 SMC2O95347 1197 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 CFBP00751 764 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 NR3C2P08235 984 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 OR52Z1P0C646 297 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 POLR2MP0CAP2 368 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 HOXD8P13378 290 aaPredicted RBP7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms