RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 PCDHGA3Q9Y5H0 932 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 PCDHGA2Q9Y5H1 932 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 PPP2R3BQ9Y5P8 575 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 E2F8A0AVK6 867 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 GOLGA6L22H0YM25 854 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 ELL2O00472 640 aaPredicted RBP5.44□□□□□ -1.54
VPS29-205ENST00000548539 PRPF3O43395 683 aaKnown RBP5.44□□□□□ -1.54
VPS29-205ENST00000548539 ABLIM3O94929 683 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 PRLP01236 227 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 LPLP06858 475 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 RBP3P10745 1247 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 CR2P20023 1033 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 GLRBP48167 497 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 RGS3P49796 1198 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 USP10Q14694 798 aaKnown RBP5.44□□□□□ -1.54
VPS29-205ENST00000548539 MYBPC3Q14896 1274 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 TOR2AQ5JU69 321 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 TTC38Q5R3I4 469 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 LRSAM1Q6UWE0 723 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 PROSER1Q86XN7 944 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 NME9Q86XW9 330 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 LARP4BQ92615 738 aaKnown RBP5.44□□□□□ -1.54
VPS29-205ENST00000548539 PCSK5Q92824 1860 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 NAF1Q96HR8 494 aaKnown RBP5.44□□□□□ -1.54
VPS29-205ENST00000548539 ACAP3Q96P50 834 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 SLC13A1Q9BZW2 595 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 ZFP69BQ9UJL9 534 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 MRFAP1Q9Y605 127 aa5.44□□□□□ -1.54
VPS29-205ENST00000548539 PRSS38A1L453 326 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 PRPF6O94906 941 aaKnown RBP5.43□□□□□ -1.54
VPS29-205ENST00000548539 PF4V1P10720 104 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 OSMP13725 252 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 ATF3P18847 181 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 ENPP1P22413 925 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 PTGS1P23219 599 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 ACRV1P26436 265 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 RECQLP46063 649 aaPredicted RBP5.43□□□□□ -1.54
VPS29-205ENST00000548539 MANFP55145 182 aaKnown RBP5.43□□□□□ -1.54
VPS29-205ENST00000548539 PFKPQ01813 784 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 TCIRG1Q13488 830 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 MLC1Q15049 377 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 UGT8Q16880 541 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 SKIDA1Q1XH10 827 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 SLFN12LQ6IEE8 588 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 TIGD7Q6NT04 549 aaPredicted RBP5.43□□□□□ -1.54
VPS29-205ENST00000548539 MAMDC4Q6UXC1 1216 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 UNQ6494/PRO21346Q6UXR6 183 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 TPH2Q8IWU9 490 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 STPG3Q8N7X2 389 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 ZNF483Q8TF39 744 aaPredicted RBP5.43□□□□□ -1.54
VPS29-205ENST00000548539 MAML3Q96JK9 1138 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 CCDC136Q96JN2 1154 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 SLC2A13Q96QE2 648 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 AGAP2Q99490 1192 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 CARD11Q9BXL7 1154 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 PRDM12Q9H4Q4 367 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 USP36Q9P275 1121 aaKnown RBP5.43□□□□□ -1.54
VPS29-205ENST00000548539 ARHGAP20Q9P2F6 1191 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 KCNG1Q9UIX4 513 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 OAZ3Q9UMX2 235 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 PTPN22Q9Y2R2 807 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 DMRT1Q9Y5R6 373 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 SLC30A1Q9Y6M5 507 aa5.43□□□□□ -1.54
VPS29-205ENST00000548539 ST20-MTHFSA0A0A6YYL1 179 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 KLHL33A6NCF5 533 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 TRIM75PA6NK02 468 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 ZNF839A8K0R7 811 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 H0Y858 1186 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 MPIG6BO95866 241 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 ENO2P09104 434 aaPredicted RBP5.42□□□□□ -1.54
VPS29-205ENST00000548539 ZNF888P0CJ79 500 aaPredicted RBP5.42□□□□□ -1.54
VPS29-205ENST00000548539 ATXN1P54253 815 aaKnown RBP5.42□□□□□ -1.54
VPS29-205ENST00000548539 ALDH6A1Q02252 535 aaKnown RBP5.42□□□□□ -1.54
VPS29-205ENST00000548539 ADCY2Q08462 1091 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 FSCN1Q16658 493 aaKnown RBP5.42□□□□□ -1.54
VPS29-205ENST00000548539 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.42□□□□□ -1.54
VPS29-205ENST00000548539 PITRM1Q5JRX3 1037 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 FNDC7Q5VTL7 733 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 CPA6Q8N4T0 437 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 E2F7Q96AV8 911 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 VOPP1Q96AW1 172 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 C8orf48Q96LL4 319 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 TEKT5Q96M29 485 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 OR14A2Q96R54 314 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 AMNQ9BXJ7 453 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 INCENPQ9NQS7 918 aa5.42□□□□□ -1.54
VPS29-205ENST00000548539 CDC14BO60729 498 aa5.41□□□□□ -1.54
VPS29-205ENST00000548539 RAMP2O60895 175 aa5.41□□□□□ -1.54
VPS29-205ENST00000548539 IL33O95760 270 aa5.41□□□□□ -1.54
VPS29-205ENST00000548539 TBX4P57082 545 aa5.41□□□□□ -1.54
VPS29-205ENST00000548539 CCT2P78371 535 aaKnown RBP5.41□□□□□ -1.54
VPS29-205ENST00000548539 ROM1Q03395 351 aa5.41□□□□□ -1.54
VPS29-205ENST00000548539 MOGSQ13724 837 aa5.41□□□□□ -1.54
VPS29-205ENST00000548539 NOLC1Q14978 699 aaKnown RBP eCLIP5.41□□□□□ -1.54
VPS29-205ENST00000548539 FAM102BQ5T8I3 360 aa5.41□□□□□ -1.54
VPS29-205ENST00000548539 EFCAB2Q5VUJ9 269 aa5.41□□□□□ -1.54
VPS29-205ENST00000548539 KIAA1841Q6NSI8 718 aa5.41□□□□□ -1.54
VPS29-205ENST00000548539 JADE3Q92613 823 aa5.41□□□□□ -1.54
VPS29-205ENST00000548539 LRGUKQ96M69 825 aa5.41□□□□□ -1.54
VPS29-205ENST00000548539 ORAI2Q96SN7 254 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms