RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 FDXACB1Q9BRP7 624 aaPredicted RBP14.36□□□□□ -0.11
SCAF11-208ENST00000546534 MRPL17Q9NRX2 175 aaKnown RBP14.36□□□□□ -0.11
SCAF11-208ENST00000546534 DLL3Q9NYJ7 618 aa14.36□□□□□ -0.11
SCAF11-208ENST00000546534 EPS15L1Q9UBC2 864 aa14.36□□□□□ -0.11
SCAF11-208ENST00000546534 MYH9P35579 1960 aaKnown RBP14.36□□□□□ -0.11
SCAF11-208ENST00000546534 CLUHO75153 1309 aa14.36□□□□□ -0.11
SCAF11-208ENST00000546534 C2orf16Q68DN1 1984 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 C2CD2LO14523 706 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 ZBTB43O43298 467 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 SRFP11831 508 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 SFPQP23246 707 aaKnown RBP eCLIP14.35□□□□□ -0.11
SCAF11-208ENST00000546534 CDC27P30260 824 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 RAB27AP51159 221 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 AFF1P51825 1210 aaKnown RBP14.35□□□□□ -0.11
SCAF11-208ENST00000546534 CDC42EP1Q00587 391 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 NECTIN1Q15223 517 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 ZC3H14Q6PJT7 736 aaKnown RBP14.35□□□□□ -0.11
SCAF11-208ENST00000546534 AGMOQ6ZNB7 445 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 C1orf210Q8IVY1 113 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 LENG9Q96B70 501 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 FAM217BQ9NTX9 383 aaPredicted RBP14.35□□□□□ -0.11
SCAF11-208ENST00000546534 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.35□□□□□ -0.11
SCAF11-208ENST00000546534 STK39Q9UEW8 545 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 SIT1Q9Y3P8 196 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 DNAH14Q0VDD8 3507 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 WDR87Q6ZQQ6 2873 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 OTOGLQ3ZCN5 2332 aa14.35□□□□□ -0.11
SCAF11-208ENST00000546534 ESYT2A0FGR8 921 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 TMEM150BA6NC51 233 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 C2orf72A6NCS6 295 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 GOLGA8AA7E2F4 631 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 GOLGA8BA8MQT2 603 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 INPPL1O15357 1258 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 CHMP2AO43633 222 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 RFPL2O75678 378 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 ALDH2P05091 517 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 CIITAP33076 1130 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 AK2P54819 239 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 MTERF2Q49AM1 385 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 PHLDB3Q6NSJ2 640 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 TMEM92Q6UXU6 159 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 TAS1R1Q7RTX1 841 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 REXO1Q8N1G1 1221 aaKnown RBP14.34□□□□□ -0.11
SCAF11-208ENST00000546534 SUMF1Q8NBK3 374 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 STAMQ92783 540 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 NXPE3Q969Y0 559 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 TCEANC2Q96MN5 208 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 CNTNAP3BQ96NU0 1288 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 CEP89Q96ST8 783 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 RHOBTB2Q9BYZ6 727 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 CNTNAP3Q9BZ76 1288 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 INO80BQ9C086 356 aaPredicted RBP14.34□□□□□ -0.11
SCAF11-208ENST00000546534 ZMYND12Q9H0C1 365 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 FAN1Q9Y2M0 1017 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 CEP250Q9BV73 2442 aa14.34□□□□□ -0.11
SCAF11-208ENST00000546534 DMXL1Q9Y485 3027 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 IGKV6-21A0A0C4DH24 114 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 POTEMA6NI47 508 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 NRP1O14786 923 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 TEX28O15482 410 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 SOD2P04179 222 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 URODP06132 367 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 DNM2P50570 870 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 PFKFB3Q16875 520 aaPredicted RBP14.33□□□□□ -0.12
SCAF11-208ENST00000546534 RSPO4Q2I0M5 234 aaPredicted RBP14.33□□□□□ -0.12
SCAF11-208ENST00000546534 POTEGQ6S5H5 508 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 CYP26C1Q6V0L0 522 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 CATSPER4Q7RTX7 472 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 ZNF410Q86VK4 478 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 RHPN2Q8IUC4 686 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 KSR1Q8IVT5 923 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 URGCPQ8TCY9 931 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 SMG7Q92540 1137 aaKnown RBP14.33□□□□□ -0.12
SCAF11-208ENST00000546534 ZNF707Q96C28 371 aaPredicted RBP14.33□□□□□ -0.12
SCAF11-208ENST00000546534 PGBD4Q96DM1 585 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 RPS6KC1Q96S38 1066 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 SH2D3AQ9BRG2 576 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 TMEM175Q9BSA9 504 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 NIFKQ9BYG3 293 aaKnown RBP14.33□□□□□ -0.12
SCAF11-208ENST00000546534 UNC45AQ9H3U1 944 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 C6orf50Q9HD87 102 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 ARHGEF3Q9NR81 526 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 SUCLA2Q9P2R7 463 aaPredicted RBP14.33□□□□□ -0.12
SCAF11-208ENST00000546534 SEPT9Q9UHD8 586 aaPredicted RBP14.33□□□□□ -0.12
SCAF11-208ENST00000546534 PCDHB2Q9Y5E7 798 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 CACNA1BQ00975 2339 aa14.33□□□□□ -0.12
SCAF11-208ENST00000546534 MSH4O15457 936 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 EDIL3O43854 480 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 GAS7O60861 476 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 STBD1O95210 358 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 GLUD1P00367 558 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 ADH1AP07327 375 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 SPATA31D3P0C874 917 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 GLULP15104 373 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 SFNP31947 248 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 JAK3P52333 1124 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 FOXK1P85037 733 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 EXOSC10Q01780 885 aaKnown RBP14.32□□□□□ -0.12
SCAF11-208ENST00000546534 XKR3Q5GH77 459 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 DCLRE1AQ6PJP8 1040 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms