RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 PRELID2Q8N945 189 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 PRPF38AQ8NAV1 312 aaKnown RBP17.06■□□□□ 0.32
LDLR-204ENST00000545707 PSMD1Q99460 953 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 PAGR1Q9BTK6 254 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 GLIS2Q9BZE0 524 aaPredicted RBP17.06■□□□□ 0.32
LDLR-204ENST00000545707 ODF2LQ9ULJ1 636 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 GOLGA6L10A0A0M3HER8 536 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 KIAA0391O15091 583 aaKnown RBP17.06■□□□□ 0.32
LDLR-204ENST00000545707 FSBPO95073 299 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 CCDC172P0C7W6 258 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 ITGB5P18084 799 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 C1orf220Q5T0J3 134 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 SPATS2Q86XZ4 545 aaKnown RBP17.06■□□□□ 0.32
LDLR-204ENST00000545707 CNPY4Q8N129 248 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 STRA6Q9BX79 667 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 TEKT3Q9BXF9 490 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 WDR11Q9BZH6 1224 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 COMTP21964 271 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 CHRNA5P30532 468 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 VAMP7P51809 220 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 MNAT1P51948 309 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 PMS2P54278 862 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 MIGA2Q7L4E1 593 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 IL31RAQ8NI17 732 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 SEC16BQ96JE7 1060 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 OSBPL7Q9BZF2 842 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 SEMA4AQ9H3S1 761 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 ARHGEF10LQ9HCE6 1279 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 PTPN22Q9Y2R2 807 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 PYGMP11217 842 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 BCRP11274 1271 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 PTGIRP43119 386 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 RPL21P46778 160 aaKnown RBP17.05■□□□□ 0.32
LDLR-204ENST00000545707 KCNJ1P48048 391 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 BYSLQ13895 437 aaKnown RBP17.05■□□□□ 0.32
LDLR-204ENST00000545707 SLC29A2Q14542 456 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 CCDC13Q8IYE1 715 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 AGBL1Q96MI9 1066 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 GPRC5CQ9NQ84 441 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 TMX2Q9Y320 296 aa17.05■□□□□ 0.32
LDLR-204ENST00000545707 ANKRD63C9JTQ0 380 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 CALCAP01258 141 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 SLCO1A2P46721 670 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 IFI35P80217 286 aaPredicted RBP17.04■□□□□ 0.32
LDLR-204ENST00000545707 CC2D2BQ6DHV5 1058 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 NOP9Q86U38 636 aaKnown RBP17.04■□□□□ 0.32
LDLR-204ENST00000545707 LDHDQ86WU2 507 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 CABS1Q96KC9 395 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 NAP1L3Q99457 506 aaPredicted RBP17.04■□□□□ 0.32
LDLR-204ENST00000545707 GRHL1Q9NZI5 618 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 ATXN2Q99700 1313 aaKnown RBP17.04■□□□□ 0.32
LDLR-204ENST00000545707 DNM1LO00429 736 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 CYP26A1O43174 497 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 ENTPD3O75355 529 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 CHRNB2P17787 502 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 FGFR4P22455 802 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 GPC5P78333 572 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 B3GNT9Q6UX72 402 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 NSMFQ6X4W1 530 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 CCDC121Q6ZUS5 278 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 MIER3Q7Z3K6 550 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 YTHDF3Q7Z739 585 aaKnown RBP17.04■□□□□ 0.32
LDLR-204ENST00000545707 CPLX4Q7Z7G2 160 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 SLC47A2Q86VL8 602 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 SUGP1Q8IWZ8 645 aaKnown RBP17.04■□□□□ 0.32
LDLR-204ENST00000545707 TLCD1Q96CP7 247 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 POP1Q99575 1024 aaKnown RBP17.04■□□□□ 0.32
LDLR-204ENST00000545707 SELENOSQ9BQE4 189 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 AZI2Q9H6S1 392 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 COL20A1Q9P218 1284 aa17.04■□□□□ 0.32
LDLR-204ENST00000545707 DIS3Q9Y2L1 958 aaKnown RBP17.04■□□□□ 0.32
LDLR-204ENST00000545707 NPM3O75607 178 aaKnown RBP17.03■□□□□ 0.32
LDLR-204ENST00000545707 MAP2K1Q02750 393 aaPredicted RBP17.03■□□□□ 0.32
LDLR-204ENST00000545707 ACTN3Q08043 901 aaPredicted RBP17.03■□□□□ 0.32
LDLR-204ENST00000545707 SLC9A9Q8IVB4 645 aa17.03■□□□□ 0.32
LDLR-204ENST00000545707 RHOT2Q8IXI1 618 aa17.03■□□□□ 0.32
LDLR-204ENST00000545707 PPM1KQ8N3J5 372 aa17.03■□□□□ 0.32
LDLR-204ENST00000545707 KCTD17Q8N5Z5 321 aa17.03■□□□□ 0.32
LDLR-204ENST00000545707 FAM84AQ96KN4 292 aa17.03■□□□□ 0.32
LDLR-204ENST00000545707 ZSWIM1Q9BR11 485 aa17.03■□□□□ 0.32
LDLR-204ENST00000545707 RANBP17Q9H2T7 1088 aaKnown RBP17.03■□□□□ 0.32
LDLR-204ENST00000545707 PABPC3Q9H361 631 aaKnown RBP17.03■□□□□ 0.32
LDLR-204ENST00000545707 KCNH7Q9NS40 1196 aa17.03■□□□□ 0.32
LDLR-204ENST00000545707 HSPBP1Q9NZL4 362 aa17.03■□□□□ 0.32
LDLR-204ENST00000545707 SCAF8Q9UPN6 1271 aaKnown RBP17.03■□□□□ 0.32
LDLR-204ENST00000545707 MRPL11Q9Y3B7 192 aaKnown RBP17.03■□□□□ 0.32
LDLR-204ENST00000545707 ZHX2Q9Y6X8 837 aa17.03■□□□□ 0.32
LDLR-204ENST00000545707 UBE4BO95155 1302 aa17.03■□□□□ 0.32
LDLR-204ENST00000545707 RPTORQ8N122 1335 aa17.03■□□□□ 0.32
LDLR-204ENST00000545707 ATRNL1Q5VV63 1379 aa17.03■□□□□ 0.32
LDLR-204ENST00000545707 YDJCA8MPS7 323 aa17.02■□□□□ 0.32
LDLR-204ENST00000545707 MMEP08473 750 aa17.02■□□□□ 0.32
LDLR-204ENST00000545707 PEX5P50542 639 aa17.02■□□□□ 0.32
LDLR-204ENST00000545707 EPC2Q52LR7 807 aa17.02■□□□□ 0.32
LDLR-204ENST00000545707 CCDC137Q6PK04 289 aaKnown RBP17.02■□□□□ 0.32
LDLR-204ENST00000545707 INTS8Q75QN2 995 aaKnown RBP17.02■□□□□ 0.32
LDLR-204ENST00000545707 NEK9Q8TD19 979 aa17.02■□□□□ 0.32
LDLR-204ENST00000545707 CCDC127Q96BQ5 260 aa17.02■□□□□ 0.32
LDLR-204ENST00000545707 MXRA8Q9BRK3 442 aa17.02■□□□□ 0.32
LDLR-204ENST00000545707 GOLGA6L7A0A1B0GV03 622 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms