RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 ZFXP17010 805 aaPredicted RBP13.35□□□□□ -0.27
COL4A6-209ENST00000545689 MDM2Q00987 491 aaPredicted RBP13.35□□□□□ -0.27
COL4A6-209ENST00000545689 SNRNP48Q6IEG0 339 aaKnown RBP13.35□□□□□ -0.27
COL4A6-209ENST00000545689 ANKRD7Q92527 254 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.35□□□□□ -0.27
COL4A6-209ENST00000545689 TECPR2O15040 1411 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 CHUKO15111 745 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 SCP2P22307 547 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 EFNA5P52803 228 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 ZNF568Q3ZCX4 644 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 KCNV1Q6PIU1 500 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 CCDC137Q6PK04 289 aaKnown RBP13.35□□□□□ -0.27
COL4A6-209ENST00000545689 OR6B3Q8NGW1 331 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 PIM2Q9P1W9 311 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 HDAC6Q9UBN7 1215 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 FAM8A1Q9UBU6 413 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 SNAP23O00161 211 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 STMN1P16949 149 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 E2F5Q15329 346 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 ATP11CQ8NB49 1132 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 C11orf70Q9BRQ4 267 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 ESYT2A0FGR8 921 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 PDZD8Q8NEN9 1154 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 CHMP6Q96FZ7 201 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 ACAD9Q9H845 621 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 SLIT1O75093 1534 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 EIF3DO15371 548 aaKnown RBP eCLIP13.34□□□□□ -0.27
COL4A6-209ENST00000545689 SMIM24O75264 130 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 DNAJC8O75937 253 aaPredicted RBP13.34□□□□□ -0.27
COL4A6-209ENST00000545689 STAT3P40763 770 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 STAT4Q14765 748 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 FLT1P17948 1338 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 STXBP3O00186 592 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 ZBTB24O43167 697 aaPredicted RBP13.34□□□□□ -0.27
COL4A6-209ENST00000545689 HSPA4LO95757 839 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 PAPOLAP51003 745 aaKnown RBP13.34□□□□□ -0.27
COL4A6-209ENST00000545689 TMPRSS15P98073 1019 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 TKFCQ3LXA3 575 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 CATSPER4Q7RTX7 472 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 DDX47Q9H0S4 455 aaKnown RBP13.34□□□□□ -0.27
COL4A6-209ENST00000545689 LRFN2Q9ULH4 789 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.34□□□□□ -0.27
COL4A6-209ENST00000545689 EMSYQ7Z589 1322 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 KRT14P02533 472 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 FXR2P51116 673 aaKnown RBP eCLIP13.34□□□□□ -0.27
COL4A6-209ENST00000545689 CEP55Q53EZ4 464 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 DSTYKQ6XUX3 929 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 THNSL1Q8IYQ7 743 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 SCG3Q8WXD2 468 aaKnown RBP13.34□□□□□ -0.27
COL4A6-209ENST00000545689 ATP6V1E2Q96A05 226 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 BEGAINQ9BUH8 593 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 NGRNQ9NPE2 291 aaKnown RBP13.34□□□□□ -0.27
COL4A6-209ENST00000545689 SPATS2LQ9NUQ6 558 aaKnown RBP13.34□□□□□ -0.27
COL4A6-209ENST00000545689 GABBR1Q9UBS5 961 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 CNTNAP5Q8WYK1 1306 aa13.34□□□□□ -0.27
COL4A6-209ENST00000545689 AGTP01019 485 aa13.33□□□□□ -0.27
COL4A6-209ENST00000545689 PITPNM2Q9BZ72 1349 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 HNRNPCL1O60812 293 aaKnown RBP13.33□□□□□ -0.28
COL4A6-209ENST00000545689 CAMTA2O94983 1202 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 SDC4P31431 198 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 RFC1P35251 1148 aaPredicted RBP13.33□□□□□ -0.28
COL4A6-209ENST00000545689 HAUS6Q7Z4H7 955 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 TRIM59Q8IWR1 403 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 PLCD3Q8N3E9 789 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 TC2NQ8N9U0 490 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 UPF3AQ9H1J1 476 aaKnown RBP13.33□□□□□ -0.28
COL4A6-209ENST00000545689 ZFP69BQ9UJL9 534 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 FAF1Q9UNN5 650 aaPredicted RBP13.33□□□□□ -0.28
COL4A6-209ENST00000545689 APOBEC2Q9Y235 224 aaKnown RBP13.33□□□□□ -0.28
COL4A6-209ENST00000545689 PCDHA10Q9Y5I2 948 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 FDPSP14324 419 aaKnown RBP13.33□□□□□ -0.28
COL4A6-209ENST00000545689 BEND6Q5SZJ8 279 aaPredicted RBP13.33□□□□□ -0.28
COL4A6-209ENST00000545689 THEM5Q8N1Q8 247 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 FAM129AQ9BZQ8 928 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 APEX2Q9UBZ4 518 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 TRIM33Q9UPN9 1127 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 CACNB3P54284 484 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 TRIM62Q9BVG3 475 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 FOXP3Q9BZS1 431 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 STAP1Q9ULZ2 295 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 DIP2BQ9P265 1576 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 P4HA2O15460 535 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 ENTPD3O75355 529 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 SPAG7O75391 227 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 ZNF18P17022 549 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 HHIPL2Q6UWX4 724 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 TBC1D1Q86TI0 1168 aaPredicted RBP13.33□□□□□ -0.28
COL4A6-209ENST00000545689 GLYCTKQ8IVS8 523 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 ENGASEQ8NFI3 743 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 RNPC3Q96LT9 517 aaKnown RBP13.33□□□□□ -0.28
COL4A6-209ENST00000545689 MKNK1Q9BUB5 465 aa13.33□□□□□ -0.28
COL4A6-209ENST00000545689 MGEA5O60502 916 aa13.32□□□□□ -0.28
COL4A6-209ENST00000545689 NCF2P19878 526 aaPredicted RBP13.32□□□□□ -0.28
COL4A6-209ENST00000545689 ROR1Q01973 937 aa13.32□□□□□ -0.28
COL4A6-209ENST00000545689 ZNF449Q6P9G9 518 aa13.32□□□□□ -0.28
COL4A6-209ENST00000545689 PPWD1Q96BP3 646 aaKnown RBP13.32□□□□□ -0.28
COL4A6-209ENST00000545689 EPB41L4AQ9HCS5 686 aaPredicted RBP13.32□□□□□ -0.28
COL4A6-209ENST00000545689 PHF2O75151 1096 aa13.32□□□□□ -0.28
COL4A6-209ENST00000545689 RPSAP08865 295 aaKnown RBP13.32□□□□□ -0.28
COL4A6-209ENST00000545689 BYSLQ13895 437 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms