RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 GPC5P78333 572 aa9.43□□□□□ -0.9
TDP1-204ENST00000545686 GTF2IP78347 998 aa9.43□□□□□ -0.9
TDP1-204ENST00000545686 CYP4A11Q02928 519 aa9.43□□□□□ -0.9
TDP1-204ENST00000545686 BFSP1Q12934 665 aa9.43□□□□□ -0.9
TDP1-204ENST00000545686 ZNF211Q13398 564 aaPredicted RBP9.43□□□□□ -0.9
TDP1-204ENST00000545686 PPP1R7Q15435 360 aa9.43□□□□□ -0.9
TDP1-204ENST00000545686 TRAPPC3LQ5T215 181 aa9.43□□□□□ -0.9
TDP1-204ENST00000545686 HIBCHQ6NVY1 386 aaPredicted RBP9.43□□□□□ -0.9
TDP1-204ENST00000545686 TLDC1Q6P9B6 456 aa9.43□□□□□ -0.9
TDP1-204ENST00000545686 CCDC137Q6PK04 289 aaKnown RBP9.43□□□□□ -0.9
TDP1-204ENST00000545686 HHIPL2Q6UWX4 724 aa9.43□□□□□ -0.9
TDP1-204ENST00000545686 AMIGO3Q86WK7 504 aa9.43□□□□□ -0.9
TDP1-204ENST00000545686 FBXO11Q86XK2 927 aa9.43□□□□□ -0.9
TDP1-204ENST00000545686 SLCO2A1Q92959 643 aa9.43□□□□□ -0.9
TDP1-204ENST00000545686 HOOK2Q96ED9 719 aa9.43□□□□□ -0.9
TDP1-204ENST00000545686 FIZ1Q96SL8 496 aa9.43□□□□□ -0.9
TDP1-204ENST00000545686 HSD17B14Q9BPX1 270 aa9.43□□□□□ -0.9
TDP1-204ENST00000545686 USP40Q9NVE5 1235 aa9.43□□□□□ -0.9
TDP1-204ENST00000545686 ZNF646O15015 1829 aaPredicted RBP9.43□□□□□ -0.9
TDP1-204ENST00000545686 ANKRD31Q8N7Z5 1873 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 TLDC2A0PJX2 215 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 O00370 1275 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 OPLAHO14841 1288 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 SNX3O60493 162 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 ATP2C2O75185 946 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 RTN2O75298 545 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 NMT1P30419 496 aaKnown RBP9.42□□□□□ -0.9
TDP1-204ENST00000545686 COPB2P35606 906 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 PEX5P50542 639 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 IFI35P80217 286 aaPredicted RBP9.42□□□□□ -0.9
TDP1-204ENST00000545686 PPP2R5CQ13362 524 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 AUHQ13825 339 aaKnown RBP9.42□□□□□ -0.9
TDP1-204ENST00000545686 CRYMQ14894 314 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 CNGA2Q16280 664 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 ZNF568Q3ZCX4 644 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 ZNF720Q7Z2F6 126 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 ADAT2Q7Z6V5 191 aaKnown RBP9.42□□□□□ -0.9
TDP1-204ENST00000545686 GMCL1P1Q8NEA9 526 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 LMO3Q8TAP4 145 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 CD101Q93033 1021 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 GMCL1Q96IK5 515 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 PRMT1Q99873 361 aaKnown RBP9.42□□□□□ -0.9
TDP1-204ENST00000545686 SEMA4AQ9H3S1 761 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 SEPT11Q9NVA2 429 aaKnown RBP9.42□□□□□ -0.9
TDP1-204ENST00000545686 TAS2R14Q9NYV8 317 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 TMOD4Q9NZQ9 345 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 CTTNBP2NLQ9P2B4 639 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 IGLV3-22A0A075B6J6 115 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 EML1O00423 815 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 VIMP08670 466 aaKnown RBP9.42□□□□□ -0.9
TDP1-204ENST00000545686 GZMAP12544 262 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 EEF2P13639 858 aaKnown RBP9.42□□□□□ -0.9
TDP1-204ENST00000545686 ALADP13716 330 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 COILP38432 576 aaPredicted RBP9.42□□□□□ -0.9
TDP1-204ENST00000545686 SLC8A3P57103 927 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 CETN1Q12798 172 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 TRAF1Q13077 416 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 ZNF268Q14587 947 aaPredicted RBP9.42□□□□□ -0.9
TDP1-204ENST00000545686 TTC27Q6P3X3 843 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 PALB2Q86YC2 1186 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 FAM178BQ8IXR5 827 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 EPS8L3Q8TE67 593 aaKnown RBP9.42□□□□□ -0.9
TDP1-204ENST00000545686 SERPINB12Q96P63 405 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 CRAMP1Q96RY5 1269 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 EBF2Q9HAK2 575 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 WHRNQ9P202 907 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 USP20Q9Y2K6 914 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 CEP83Q9Y592 693 aa9.42□□□□□ -0.9
TDP1-204ENST00000545686 FOXN3O00409 490 aaPredicted RBP9.41□□□□□ -0.9
TDP1-204ENST00000545686 FTLP02792 175 aaPredicted RBP9.41□□□□□ -0.9
TDP1-204ENST00000545686 TRIM49P0CI25 452 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 TRIM49CP0CI26 452 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 CYP2J2P51589 502 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 PPARDQ03181 441 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 MKRN3Q13064 507 aaKnown RBP9.41□□□□□ -0.9
TDP1-204ENST00000545686 ALCAMQ13740 583 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 ZC2HC1CQ53FD0 456 aaPredicted RBP9.41□□□□□ -0.9
TDP1-204ENST00000545686 PHLDB3Q6NSJ2 640 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 CDC42EP5Q6NZY7 148 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 INTS8Q75QN2 995 aaKnown RBP9.41□□□□□ -0.9
TDP1-204ENST00000545686 SLC13A5Q86YT5 568 aaPredicted RBP9.41□□□□□ -0.9
TDP1-204ENST00000545686 KRT35Q92764 455 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 ELAC2Q9BQ52 826 aaKnown RBP9.41□□□□□ -0.9
TDP1-204ENST00000545686 STRA6Q9BX79 667 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 RGL1Q9NZL6 768 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 USP15Q9Y4E8 981 aaPredicted RBP9.41□□□□□ -0.9
TDP1-204ENST00000545686 C6orf229H3BNL8 230 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 PMM2O15305 246 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 SUN1O94901 812 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 SLITRK3O94933 977 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 FGFR4P22455 802 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 ZNF76P36508 570 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 CALCOCO2Q13137 446 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 COG2Q14746 738 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 ARHGAP44Q17R89 818 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 GALNTL6Q49A17 601 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 SYDE2Q5VT97 1194 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 SYDE1Q6ZW31 735 aaPredicted RBP9.41□□□□□ -0.9
TDP1-204ENST00000545686 OTOP1Q7RTM1 612 aa9.41□□□□□ -0.9
TDP1-204ENST00000545686 C12orf56Q8IXR9 622 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms