RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 GOLGA8IPA6NC78 632 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 GOLGA8JA6NMD2 632 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 KRIT1O00522 736 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 PMM2O15305 246 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 ADRB2P07550 413 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 MCCD1P59942 119 aaPredicted RBP19.51■□□□□ 0.71
VIM-209ENST00000544301 ZNF746Q6NUN9 644 aaPredicted RBP19.51■□□□□ 0.71
VIM-209ENST00000544301 MREGQ8N565 214 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 TMEM161BQ8NDZ6 487 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 RDM1Q8NG50 284 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 WHAMMQ8TF30 809 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 ZIM3Q96PE6 472 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 TMEM117Q9H0C3 514 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 TBX20Q9UMR3 447 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 USP20Q9Y2K6 914 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 FAM170AA1A519 330 aa19.5■□□□□ 0.71
VIM-209ENST00000544301 ANKRD63C9JTQ0 380 aa19.5■□□□□ 0.71
VIM-209ENST00000544301 ADSSP30520 456 aa19.5■□□□□ 0.71
VIM-209ENST00000544301 NPTX2P47972 431 aa19.5■□□□□ 0.71
VIM-209ENST00000544301 MXI1P50539 228 aa19.5■□□□□ 0.71
VIM-209ENST00000544301 GUCY2FP51841 1108 aa19.5■□□□□ 0.71
VIM-209ENST00000544301 ERVK-9P63128 1117 aa19.5■□□□□ 0.71
VIM-209ENST00000544301 SF3B2Q13435 895 aaKnown RBP19.5■□□□□ 0.71
VIM-209ENST00000544301 NLRX1Q86UT6 975 aa19.5■□□□□ 0.71
VIM-209ENST00000544301 SCYL3Q8IZE3 742 aa19.5■□□□□ 0.71
VIM-209ENST00000544301 REPS2Q8NFH8 660 aa19.5■□□□□ 0.71
VIM-209ENST00000544301 SENP7Q9BQF6 1050 aa19.5■□□□□ 0.71
VIM-209ENST00000544301 ISCUQ9H1K1 167 aa19.5■□□□□ 0.71
VIM-209ENST00000544301 TAF1DQ9H5J8 278 aaPredicted RBP19.5■□□□□ 0.71
VIM-209ENST00000544301 CNOT7Q9UIV1 285 aaKnown RBP19.5■□□□□ 0.71
VIM-209ENST00000544301 EXOC7Q9UPT5 735 aa19.5■□□□□ 0.71
VIM-209ENST00000544301 PCDHA10Q9Y5I2 948 aa19.5■□□□□ 0.71
VIM-209ENST00000544301 DOCK1Q14185 1865 aa19.5■□□□□ 0.71
VIM-209ENST00000544301 CCDC169A6NNP5 214 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 BHMG1C9JSJ3 638 aaPredicted RBP19.49■□□□□ 0.71
VIM-209ENST00000544301 CCDC188H7C350 402 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 DDX3YO15523 660 aaKnown RBP19.49■□□□□ 0.71
VIM-209ENST00000544301 SART1O43290 800 aaKnown RBP19.49■□□□□ 0.71
VIM-209ENST00000544301 NR3C2P08235 984 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 SMTNP53814 917 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 PPFIA1Q13136 1202 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 IQCKQ8N0W5 287 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 EIF1ADQ8N9N8 165 aaKnown RBP19.49■□□□□ 0.71
VIM-209ENST00000544301 ZKSCAN4Q969J2 545 aaPredicted RBP19.49■□□□□ 0.71
VIM-209ENST00000544301 GPRASP2Q96D09 838 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 RUFY1Q96T51 708 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 ZNF112Q9UJU3 913 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 COG5Q9UP83 839 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 ITGA4P13612 1032 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 DCAF15Q66K64 600 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 CBWD2Q8IUF1 395 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 MAP4K3Q8IVH8 894 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 ZNF280CQ8ND82 737 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.49■□□□□ 0.71
VIM-209ENST00000544301 KAT5Q92993 513 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 KIFC3Q9BVG8 833 aa19.49■□□□□ 0.71
VIM-209ENST00000544301 DDX47Q9H0S4 455 aaKnown RBP19.49■□□□□ 0.71
VIM-209ENST00000544301 TTC7AQ9ULT0 858 aaPredicted RBP19.49■□□□□ 0.71
VIM-209ENST00000544301 PTPRAP18433 802 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 DMP1Q13316 513 aaPredicted RBP19.48■□□□□ 0.71
VIM-209ENST00000544301 SNRNP35Q16560 246 aaKnown RBP19.48■□□□□ 0.71
VIM-209ENST00000544301 SNRNP48Q6IEG0 339 aaKnown RBP19.48■□□□□ 0.71
VIM-209ENST00000544301 LRRC31Q6UY01 552 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 RPUSD2Q8IZ73 545 aaKnown RBP19.48■□□□□ 0.71
VIM-209ENST00000544301 PIK3R5Q8WYR1 880 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 ARL8AQ96BM9 186 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 HVCN1Q96D96 273 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 AS3MTQ9HBK9 375 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 GJA3Q9Y6H8 435 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 ZNF862O60290 1169 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 CNGA1P29973 690 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 CUL1Q13616 776 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 TTMPQ5BVD1 217 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 CFAP58Q5T655 872 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 DCAF12L1Q5VU92 463 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 PROCA1Q8NCQ7 364 aaPredicted RBP19.48■□□□□ 0.71
VIM-209ENST00000544301 BSNDQ8WZ55 320 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 SAAL1Q96ER3 474 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 GABBR1Q9UBS5 961 aa19.48■□□□□ 0.71
VIM-209ENST00000544301 DIS3Q9Y2L1 958 aaKnown RBP19.48■□□□□ 0.71
VIM-209ENST00000544301 RLFQ13129 1914 aa19.47■□□□□ 0.71
VIM-209ENST00000544301 DENND3A2RUS2 1198 aa19.47■□□□□ 0.71
VIM-209ENST00000544301 MAFGO15525 162 aa19.47■□□□□ 0.71
VIM-209ENST00000544301 STBD1O95210 358 aa19.47■□□□□ 0.71
VIM-209ENST00000544301 ZBTB7AO95365 584 aa19.47■□□□□ 0.71
VIM-209ENST00000544301 FTLP02792 175 aaPredicted RBP19.47■□□□□ 0.71
VIM-209ENST00000544301 KCNA2P16389 499 aa19.47■□□□□ 0.71
VIM-209ENST00000544301 ECHS1P30084 290 aa19.47■□□□□ 0.71
VIM-209ENST00000544301 HADHBP55084 474 aaKnown RBP19.47■□□□□ 0.71
VIM-209ENST00000544301 MAP2K1Q02750 393 aaPredicted RBP19.47■□□□□ 0.71
VIM-209ENST00000544301 OTUD6AQ7L8S5 288 aa19.47■□□□□ 0.71
VIM-209ENST00000544301 RHOT2Q8IXI1 618 aa19.47■□□□□ 0.71
VIM-209ENST00000544301 FAM71AQ8IYT1 594 aa19.47■□□□□ 0.71
VIM-209ENST00000544301 SEMA4DQ92854 862 aa19.47■□□□□ 0.71
VIM-209ENST00000544301 CEP170P1Q96L14 293 aa19.47■□□□□ 0.71
VIM-209ENST00000544301 NTPCRQ9BSD7 190 aaKnown RBP19.47■□□□□ 0.71
VIM-209ENST00000544301 SLITRK6Q9H5Y7 841 aa19.47■□□□□ 0.71
VIM-209ENST00000544301 KMT5AQ9NQR1 393 aa19.47■□□□□ 0.71
VIM-209ENST00000544301 PICK1Q9NRD5 415 aa19.47■□□□□ 0.71
VIM-209ENST00000544301 CWC15Q9P013 229 aaKnown RBP19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms