RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 APEX2Q9UBZ4 518 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 EXOC7Q9UPT5 735 aa15.79■□□□□ 0.12
CLIP1-216ENST00000541410 LRRC37A2A6NM11 1700 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 IQCA1LA6NCM1 817 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 SEC31AO94979 1220 aaKnown RBP15.78■□□□□ 0.12
CLIP1-216ENST00000541410 H2AFXP16104 143 aaPredicted RBP15.78■□□□□ 0.12
CLIP1-216ENST00000541410 LMBRD2Q68DH5 695 aaPredicted RBP15.78■□□□□ 0.12
CLIP1-216ENST00000541410 NFRKBQ6P4R8 1299 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 MTERF4Q7Z6M4 381 aaKnown RBP15.78■□□□□ 0.12
CLIP1-216ENST00000541410 TRIM58Q8NG06 486 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 ZBTB9Q96C00 473 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 MAP7D2Q96T17 732 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 FAM213AQ9BRX8 229 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 PARD6BQ9BYG5 372 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 EHD2Q9NZN4 543 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 PACSIN2Q9UNF0 486 aaPredicted RBP15.78■□□□□ 0.12
CLIP1-216ENST00000541410 SCN4AP35499 1836 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 CTAGE15A4D2H0 777 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 FOXN3O00409 490 aaPredicted RBP15.78■□□□□ 0.12
CLIP1-216ENST00000541410 PJA2O43164 708 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 CTAGE8P0CG41 777 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 GLRA2P23416 452 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 SOX5P35711 763 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 STAT1P42224 750 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 NEDD9Q14511 834 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 PAPD7Q5XG87 772 aaKnown RBP15.78■□□□□ 0.12
CLIP1-216ENST00000541410 CTAGE6Q86UF2 777 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 CTAGE4Q8IX94 777 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 C12orf56Q8IXR9 622 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 COG1Q8WTW3 980 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 SPIRE2Q8WWL2 714 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 ZBTB45Q96K62 511 aaPredicted RBP15.78■□□□□ 0.12
CLIP1-216ENST00000541410 DDX41Q9UJV9 622 aaKnown RBP15.78■□□□□ 0.12
CLIP1-216ENST00000541410 NAGPAQ9UK23 515 aa15.78■□□□□ 0.12
CLIP1-216ENST00000541410 PDE2AO00408 941 aaPredicted RBP15.77■□□□□ 0.12
CLIP1-216ENST00000541410 FTCDO95954 541 aa15.77■□□□□ 0.12
CLIP1-216ENST00000541410 USP8P40818 1118 aa15.77■□□□□ 0.12
CLIP1-216ENST00000541410 MYBPC2Q14324 1141 aa15.77■□□□□ 0.12
CLIP1-216ENST00000541410 WHAMMP3Q1A5X7 153 aa15.77■□□□□ 0.12
CLIP1-216ENST00000541410 ALKBH5Q6P6C2 394 aaKnown RBP15.77■□□□□ 0.12
CLIP1-216ENST00000541410 GLYCTKQ8IVS8 523 aa15.77■□□□□ 0.12
CLIP1-216ENST00000541410 U2AF1L4Q8WU68 220 aaKnown RBP15.77■□□□□ 0.12
CLIP1-216ENST00000541410 TRAPPC12Q8WVT3 735 aa15.77■□□□□ 0.12
CLIP1-216ENST00000541410 SLC7A3Q8WY07 619 aa15.77■□□□□ 0.12
CLIP1-216ENST00000541410 SEMA4DQ92854 862 aa15.77■□□□□ 0.12
CLIP1-216ENST00000541410 STK33Q9BYT3 514 aa15.77■□□□□ 0.12
CLIP1-216ENST00000541410 SUGCTQ9HAC7 445 aa15.77■□□□□ 0.12
CLIP1-216ENST00000541410 ACP6Q9NPH0 428 aa15.77■□□□□ 0.12
CLIP1-216ENST00000541410 SEPT11Q9NVA2 429 aaKnown RBP15.77■□□□□ 0.12
CLIP1-216ENST00000541410 EVPLQ92817 2033 aa15.77■□□□□ 0.12
CLIP1-216ENST00000541410 IGKV6D-21A0A0A0MT36 114 aa15.77■□□□□ 0.11
CLIP1-216ENST00000541410 LRRIQ3A6PVS8 624 aaPredicted RBP15.77■□□□□ 0.11
CLIP1-216ENST00000541410 PDHXO00330 501 aa15.77■□□□□ 0.11
CLIP1-216ENST00000541410 NOP56O00567 594 aaKnown RBP15.77■□□□□ 0.11
CLIP1-216ENST00000541410 DDX3XO00571 662 aaKnown RBP eCLIP15.77■□□□□ 0.11
CLIP1-216ENST00000541410 MXI1P50539 228 aa15.77■□□□□ 0.11
CLIP1-216ENST00000541410 SEZ6Q53EL9 994 aa15.77■□□□□ 0.11
CLIP1-216ENST00000541410 METTL7BQ6UX53 244 aa15.77■□□□□ 0.11
CLIP1-216ENST00000541410 SEPT1Q8WYJ6 367 aa15.77■□□□□ 0.11
CLIP1-216ENST00000541410 HINFPQ9BQA5 517 aa15.77■□□□□ 0.11
CLIP1-216ENST00000541410 DHX33Q9H6R0 707 aaKnown RBP15.77■□□□□ 0.11
CLIP1-216ENST00000541410 ARHGAP28Q9P2N2 729 aa15.77■□□□□ 0.11
CLIP1-216ENST00000541410 FBXL5Q9UKA1 691 aa15.77■□□□□ 0.11
CLIP1-216ENST00000541410 DNAJC25-GNG10A0A024R161 153 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 PALMO75781 387 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 EDN1P05305 212 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 ACOT2P49753 483 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 LIG4P49917 911 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 WNT7BP56706 349 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 PNMA8AQ86V59 439 aaPredicted RBP15.76■□□□□ 0.11
CLIP1-216ENST00000541410 LRRC71Q8N4P6 559 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 LNX1Q8TBB1 728 aaPredicted RBP15.76■□□□□ 0.11
CLIP1-216ENST00000541410 CAGE1Q8TC20 777 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 RABGGTAQ92696 567 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 SPATA33Q96N06 139 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 NOX5Q96PH1 765 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 ALS2CR12Q96Q35 445 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 CEP89Q96ST8 783 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 C17orf75Q9HAS0 396 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 JRKLQ9Y4A0 524 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 CCL15-CCL14A0A0B4J2E2 113 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 TTLL13PA6NNM8 815 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 BTBD19C9JJ37 291 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 HARSP12081 509 aaKnown RBP15.76■□□□□ 0.11
CLIP1-216ENST00000541410 PRKCIP41743 596 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 NAB2Q15742 525 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 CCL15Q16663 113 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 EPC2Q52LR7 807 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 PALB2Q86YC2 1186 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 SLC17A8Q8NDX2 589 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 DEPTORQ8TB45 409 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 PARD3BQ8TEW8 1205 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 PNKPQ96T60 521 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 PI4K2AQ9BTU6 479 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 AZI2Q9H6S1 392 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 ANKZF1Q9H8Y5 726 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 ANKFY1Q9P2R3 1169 aa15.76■□□□□ 0.11
CLIP1-216ENST00000541410 GJB1P08034 283 aa15.75■□□□□ 0.11
CLIP1-216ENST00000541410 TXNP10599 105 aaKnown RBP15.75■□□□□ 0.11
CLIP1-216ENST00000541410 FERP16591 822 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms