RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 PCDH10Q9P2E7 1040 aa20.68■□□□□ 0.9
VPS33A-205ENST00000541169 MSRAQ9UJ68 235 aa20.68■□□□□ 0.9
VPS33A-205ENST00000541169 HOOK1Q9UJC3 728 aaKnown RBP20.68■□□□□ 0.9
VPS33A-205ENST00000541169 LRFN2Q9ULH4 789 aa20.68■□□□□ 0.9
VPS33A-205ENST00000541169 PCDHB7Q9Y5E2 793 aa20.68■□□□□ 0.9
VPS33A-205ENST00000541169 CNTNAP2Q9UHC6 1331 aa20.68■□□□□ 0.9
VPS33A-205ENST00000541169 TTC3P53804 2025 aa20.67■□□□□ 0.9
VPS33A-205ENST00000541169 A0A1B0GUA9 196 aa20.67■□□□□ 0.9
VPS33A-205ENST00000541169 PVALEFA0A1B0GWK0 134 aa20.67■□□□□ 0.9
VPS33A-205ENST00000541169 FRMD3A2A2Y4 597 aa20.67■□□□□ 0.9
VPS33A-205ENST00000541169 TSPAN1O60635 241 aa20.67■□□□□ 0.9
VPS33A-205ENST00000541169 ZNF623O75123 536 aa20.67■□□□□ 0.9
VPS33A-205ENST00000541169 PRKCBP05771 671 aa20.67■□□□□ 0.9
VPS33A-205ENST00000541169 FAM160A1Q05DH4 1040 aa20.67■□□□□ 0.9
VPS33A-205ENST00000541169 TCTN1Q2MV58 587 aa20.67■□□□□ 0.9
VPS33A-205ENST00000541169 DYMQ7RTS9 669 aa20.67■□□□□ 0.9
VPS33A-205ENST00000541169 RTN4RL1Q86UN2 441 aaPredicted RBP20.67■□□□□ 0.9
VPS33A-205ENST00000541169 TMEM161BQ8NDZ6 487 aa20.67■□□□□ 0.9
VPS33A-205ENST00000541169 DNAJC19Q96DA6 116 aa20.67■□□□□ 0.9
VPS33A-205ENST00000541169 RAD9AQ99638 391 aa20.67■□□□□ 0.9
VPS33A-205ENST00000541169 ZHX3Q9H4I2 956 aa20.67■□□□□ 0.9
VPS33A-205ENST00000541169 TMEM265A0A087WTH1 108 aa20.66■□□□□ 0.9
VPS33A-205ENST00000541169 NPHP3-ACAD11A0A0J9YXS1 232 aa20.66■□□□□ 0.9
VPS33A-205ENST00000541169 SFI1A8K8P3 1242 aa20.66■□□□□ 0.9
VPS33A-205ENST00000541169 N4BP3O15049 544 aa20.66■□□□□ 0.9
VPS33A-205ENST00000541169 ACTN4O43707 911 aaKnown RBP20.66■□□□□ 0.9
VPS33A-205ENST00000541169 CSDE1O75534 798 aaKnown RBP20.66■□□□□ 0.9
VPS33A-205ENST00000541169 ZNF202O95125 648 aa20.66■□□□□ 0.9
VPS33A-205ENST00000541169 IDEP14735 1019 aa20.66■□□□□ 0.9
VPS33A-205ENST00000541169 HOXA11P31270 313 aaPredicted RBP20.66■□□□□ 0.9
VPS33A-205ENST00000541169 UBE2HP62256 183 aa20.66■□□□□ 0.9
VPS33A-205ENST00000541169 AMHR2Q16671 573 aa20.66■□□□□ 0.9
VPS33A-205ENST00000541169 SLC27A1Q6PCB7 646 aa20.66■□□□□ 0.9
VPS33A-205ENST00000541169 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.66■□□□□ 0.9
VPS33A-205ENST00000541169 HAUS6Q7Z4H7 955 aa20.66■□□□□ 0.9
VPS33A-205ENST00000541169 PGBD4Q96DM1 585 aa20.66■□□□□ 0.9
VPS33A-205ENST00000541169 TIGD1Q96MW7 591 aa20.66■□□□□ 0.9
VPS33A-205ENST00000541169 ADPGKQ9BRR6 497 aa20.66■□□□□ 0.9
VPS33A-205ENST00000541169 MRPL4Q9BYD3 311 aaKnown RBP20.66■□□□□ 0.9
VPS33A-205ENST00000541169 UBN1Q9NPG3 1134 aa20.66■□□□□ 0.9
VPS33A-205ENST00000541169 PANK4Q9NVE7 773 aa20.66■□□□□ 0.9
VPS33A-205ENST00000541169 GOLGA6L22H0YM25 854 aa20.65■□□□□ 0.9
VPS33A-205ENST00000541169 SLC16A4O15374 487 aa20.65■□□□□ 0.9
VPS33A-205ENST00000541169 TLL1O43897 1013 aa20.65■□□□□ 0.9
VPS33A-205ENST00000541169 MGEA5O60502 916 aa20.65■□□□□ 0.9
VPS33A-205ENST00000541169 ARF4P18085 180 aaPredicted RBP20.65■□□□□ 0.9
VPS33A-205ENST00000541169 FGFR4P22455 802 aa20.65■□□□□ 0.9
VPS33A-205ENST00000541169 DEFB103AP81534 67 aa20.65■□□□□ 0.9
VPS33A-205ENST00000541169 TMEM132AQ24JP5 1023 aa20.65■□□□□ 0.9
VPS33A-205ENST00000541169 LONRF3Q496Y0 759 aa20.65■□□□□ 0.9
VPS33A-205ENST00000541169 HERC4Q5GLZ8 1057 aaPredicted RBP20.65■□□□□ 0.9
VPS33A-205ENST00000541169 ZPBP2Q6X784 338 aa20.65■□□□□ 0.9
VPS33A-205ENST00000541169 KRBA2Q6ZNG9 492 aa20.65■□□□□ 0.9
VPS33A-205ENST00000541169 ELOA2Q8IYF1 753 aaPredicted RBP20.65■□□□□ 0.9
VPS33A-205ENST00000541169 CRIPAKQ8N1N5 446 aa20.65■□□□□ 0.9
VPS33A-205ENST00000541169 LINC01599Q8WXQ3 324 aa20.65■□□□□ 0.9
VPS33A-205ENST00000541169 CCDC47Q96A33 483 aaKnown RBP20.65■□□□□ 0.9
VPS33A-205ENST00000541169 FAM105AQ9NUU6 356 aa20.65■□□□□ 0.9
VPS33A-205ENST00000541169 SERTAD1Q9UHV2 236 aa20.65■□□□□ 0.9
VPS33A-205ENST00000541169 PCDHB13Q9Y5F0 798 aa20.65■□□□□ 0.9
VPS33A-205ENST00000541169 COL4A6Q14031 1691 aa20.64■□□□□ 0.9
VPS33A-205ENST00000541169 ADGRA3Q8IWK6 1321 aa20.64■□□□□ 0.89
VPS33A-205ENST00000541169 CARNS1A5YM72 827 aa20.64■□□□□ 0.89
VPS33A-205ENST00000541169 K7ENM7 598 aa20.64■□□□□ 0.89
VPS33A-205ENST00000541169 ASIC1P78348 528 aa20.64■□□□□ 0.89
VPS33A-205ENST00000541169 HTRA4P83105 476 aaPredicted RBP20.64■□□□□ 0.89
VPS33A-205ENST00000541169 GTF2BQ00403 316 aa20.64■□□□□ 0.89
VPS33A-205ENST00000541169 UNC13DQ70J99 1090 aa20.64■□□□□ 0.89
VPS33A-205ENST00000541169 ECHDC2Q86YB7 292 aa20.64■□□□□ 0.89
VPS33A-205ENST00000541169 FMR1NBQ8N0W7 255 aaPredicted RBP20.64■□□□□ 0.89
VPS33A-205ENST00000541169 PAGE5Q96GU1 130 aa20.64■□□□□ 0.89
VPS33A-205ENST00000541169 YME1L1Q96TA2 773 aa20.64■□□□□ 0.89
VPS33A-205ENST00000541169 TRIM6Q9C030 488 aaPredicted RBP20.64■□□□□ 0.89
VPS33A-205ENST00000541169 MRPL44Q9H9J2 332 aaKnown RBP20.64■□□□□ 0.89
VPS33A-205ENST00000541169 ZMYM2Q9UBW7 1377 aa20.63■□□□□ 0.89
VPS33A-205ENST00000541169 GTPBP6O43824 516 aaPredicted RBP20.63■□□□□ 0.89
VPS33A-205ENST00000541169 CACNB1Q02641 598 aaPredicted RBP20.63■□□□□ 0.89
VPS33A-205ENST00000541169 DCAF4L1Q3SXM0 396 aa20.63■□□□□ 0.89
VPS33A-205ENST00000541169 ZNF720Q7Z2F6 126 aa20.63■□□□□ 0.89
VPS33A-205ENST00000541169 KIFC3Q9BVG8 833 aa20.63■□□□□ 0.89
VPS33A-205ENST00000541169 GTPBP4Q9BZE4 634 aaKnown RBP20.63■□□□□ 0.89
VPS33A-205ENST00000541169 GOLPH3LQ9H4A5 285 aa20.63■□□□□ 0.89
VPS33A-205ENST00000541169 POLD4Q9HCU8 107 aa20.63■□□□□ 0.89
VPS33A-205ENST00000541169 EXOC7Q9UPT5 735 aa20.63■□□□□ 0.89
VPS33A-205ENST00000541169 TNFSF13BQ9Y275 285 aa20.63■□□□□ 0.89
VPS33A-205ENST00000541169 DGKIO75912 1065 aa20.62■□□□□ 0.89
VPS33A-205ENST00000541169 AFMP43652 599 aa20.62■□□□□ 0.89
VPS33A-205ENST00000541169 PSMD2Q13200 908 aa20.62■□□□□ 0.89
VPS33A-205ENST00000541169 ATF7IP2Q5U623 682 aa20.62■□□□□ 0.89
VPS33A-205ENST00000541169 FAM109BQ6ICB4 259 aaPredicted RBP20.62■□□□□ 0.89
VPS33A-205ENST00000541169 MRPL10Q7Z7H8 261 aaKnown RBP20.62■□□□□ 0.89
VPS33A-205ENST00000541169 SFR1Q86XK3 245 aa20.62■□□□□ 0.89
VPS33A-205ENST00000541169 ABI1Q8IZP0 508 aa20.62■□□□□ 0.89
VPS33A-205ENST00000541169 ENGASEQ8NFI3 743 aa20.62■□□□□ 0.89
VPS33A-205ENST00000541169 SLC28A3Q9HAS3 691 aa20.62■□□□□ 0.89
VPS33A-205ENST00000541169 TBX20Q9UMR3 447 aa20.62■□□□□ 0.89
VPS33A-205ENST00000541169 PCDHB2Q9Y5E7 798 aa20.62■□□□□ 0.89
VPS33A-205ENST00000541169 KINO60870 393 aaKnown RBP20.61■□□□□ 0.89
VPS33A-205ENST00000541169 TOM1L1O75674 476 aa20.61■□□□□ 0.89
VPS33A-205ENST00000541169 UPP2O95045 317 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms