RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 GPATCH4Q5T3I0 446 aaKnown RBP11.18□□□□□ -0.62
CDC42SE1-207ENST00000540998 CCDC105Q8IYK2 499 aa11.18□□□□□ -0.62
CDC42SE1-207ENST00000540998 SYT11Q9BT88 431 aa11.18□□□□□ -0.62
CDC42SE1-207ENST00000540998 AGPAT3Q9NRZ7 376 aa11.18□□□□□ -0.62
CDC42SE1-207ENST00000540998 TCP11X1B4DZS4 312 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 SLITRK3O94933 977 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 RPL13P26373 211 aaKnown RBP11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 PSMC2P35998 433 aaKnown RBP11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 PPP3CAQ08209 521 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 NEDD9Q14511 834 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 HP1BP3Q5SSJ5 553 aaPredicted RBP11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 CCDC174Q6PII3 467 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 SLFN12Q8IYM2 578 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 CRYGNQ8WXF5 182 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 HERPUD2Q9BSE4 406 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 STK33Q9BYT3 514 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 RAB17Q9H0T7 212 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 ACTR5Q9H9F9 607 aaPredicted RBP11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 F5H6K3 240 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 CLDN3O15551 220 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 MMP13P45452 471 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 MPP2Q14168 576 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 APOBEC3HQ6NTF7 200 aaKnown RBP11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 PPP1R18Q6NYC8 613 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 FOXR2Q6PJQ5 311 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 FAM178BQ8IXR5 827 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 ERMNQ8TAM6 284 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 SPIRE2Q8WWL2 714 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 FIZ1Q96SL8 496 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 CBWD1Q9BRT8 395 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 SLC24A3Q9HC58 644 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 APEX2Q9UBZ4 518 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 PFASO15067 1338 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 EMSYQ7Z589 1322 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 MYH11P35749 1972 aa11.17□□□□□ -0.62
CDC42SE1-207ENST00000540998 GOLGA6L10A0A0M3HER8 536 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 NDUFB10O96000 172 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 CYP3A4P08684 503 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 RARAP10276 462 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 ATP2B4P23634 1241 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 XRCC4Q13426 336 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 AUHQ13825 339 aaKnown RBP11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 RRP1BQ14684 758 aaKnown RBP11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 SH3BP5LQ7L8J4 393 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 EXOC3L1Q86VI1 746 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 SLC47A2Q86VL8 602 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 SYCP3Q8IZU3 236 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 CCDC63Q8NA47 563 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 PLEKHO2Q8TD55 490 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 DYDC1Q8WWB3 177 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 DHX38Q92620 1227 aaKnown RBP11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 LBHD1Q9BQE6 289 aaPredicted RBP11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 KCNK9Q9NPC2 374 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 TRPC6Q9Y210 931 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 NCANO14594 1321 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 PLIN4Q96Q06 1357 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 A0A0A6YYK5 440 aaPredicted RBP11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 O00370 1275 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 RIPK2O43353 540 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 SERPINB2P05120 415 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 LMNB1P20700 586 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 ECE1P42892 770 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 CLNS1AP54105 237 aaKnown RBP11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 PLCB4Q15147 1175 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 HOOK3Q86VS8 718 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 FBXO11Q86XK2 927 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 CYP4X1Q8N118 509 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 FAM163AQ96GL9 167 aaPredicted RBP11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 AGPAT1Q99943 283 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 CARD9Q9H257 536 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 METTL14Q9HCE5 456 aaKnown RBP11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 CYP3A7-CYP3A51PA0A087WV96 503 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 RASGRF2O14827 1237 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 CYP26A1O43174 497 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 PIAS1O75925 651 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 CHRNB2P17787 502 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 CYP3A7P24462 503 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 ICA1Q05084 483 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 RNASELQ05823 741 aaKnown RBP11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 NAA25Q14CX7 972 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 CERKLQ49MI3 558 aaPredicted RBP11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 C1orf186Q6ZWK4 172 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 NOP9Q86U38 636 aaKnown RBP11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 KCNV2Q8TDN2 545 aa11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 MRRFQ96E11 262 aaKnown RBP11.16□□□□□ -0.62
CDC42SE1-207ENST00000540998 A0A1W2PRG0 241 aa11.15□□□□□ -0.62
CDC42SE1-207ENST00000540998 PHF2O75151 1096 aa11.15□□□□□ -0.62
CDC42SE1-207ENST00000540998 EYA4O95677 639 aa11.15□□□□□ -0.62
CDC42SE1-207ENST00000540998 ARP10275 920 aa11.15□□□□□ -0.62
CDC42SE1-207ENST00000540998 CETPP11597 493 aa11.15□□□□□ -0.62
CDC42SE1-207ENST00000540998 CNGA2Q16280 664 aa11.15□□□□□ -0.62
CDC42SE1-207ENST00000540998 WLSQ5T9L3 541 aa11.15□□□□□ -0.62
CDC42SE1-207ENST00000540998 LRCH2Q5VUJ6 765 aa11.15□□□□□ -0.62
CDC42SE1-207ENST00000540998 TRPM8Q7Z2W7 1104 aa11.15□□□□□ -0.62
CDC42SE1-207ENST00000540998 AGAP11Q8TF27 550 aa11.15□□□□□ -0.62
CDC42SE1-207ENST00000540998 RMDN2Q96LZ7 410 aa11.15□□□□□ -0.62
CDC42SE1-207ENST00000540998 PARVGQ9HBI0 331 aa11.15□□□□□ -0.62
CDC42SE1-207ENST00000540998 TOPORSQ9NS56 1045 aaPredicted RBP11.15□□□□□ -0.62
CDC42SE1-207ENST00000540998 PCDHA3Q9Y5H8 950 aa11.15□□□□□ -0.62
CDC42SE1-207ENST00000540998 TMEM120BA0PK00 339 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms