RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 PNPLA4P41247 253 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 KPNA2P52292 529 aaKnown RBP15.22■□□□□ 0.03
COLCA1-204ENST00000540738 KCNB1Q14721 858 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 KRT31Q15323 416 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 PTPROQ16827 1216 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 TUBE1Q9UJT0 475 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 CPP00450 1065 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 NLRP11P59045 1033 aaKnown RBP15.22■□□□□ 0.03
COLCA1-204ENST00000540738 RPS6KA2Q15349 733 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 RAB44Q7Z6P3 723 aaPredicted RBP15.22■□□□□ 0.03
COLCA1-204ENST00000540738 MAD2L2Q9UI95 211 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 ANGPTL3Q9Y5C1 460 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 SLC16A3O15427 465 aaKnown RBP15.22■□□□□ 0.03
COLCA1-204ENST00000540738 FKTNO75072 461 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 ATP2C2O75185 946 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 SLC4A1P02730 911 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 KRT33BQ14525 404 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 ARHGAP15Q53QZ3 475 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 EFHC2Q5JST6 749 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 RBM41Q96IZ5 413 aaKnown RBP15.22■□□□□ 0.03
COLCA1-204ENST00000540738 CFAP57Q96MR6 1250 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 RNF208Q9H0X6 261 aa15.22■□□□□ 0.03
COLCA1-204ENST00000540738 ASCC2Q9H1I8 757 aaPredicted RBP15.22■□□□□ 0.03
COLCA1-204ENST00000540738 PP2D1A8MPX8 630 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 RPA1P27694 616 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 FRMD5Q7Z6J6 570 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 DAGLBQ8NCG7 672 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 INTS2Q9H0H0 1204 aaKnown RBP15.21■□□□□ 0.03
COLCA1-204ENST00000540738 RNF14Q9UBS8 474 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 GLTPD2A6NH11 291 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 U2AF2P26368 475 aaKnown RBP eCLIP15.21■□□□□ 0.03
COLCA1-204ENST00000540738 DYNLT1P63172 113 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 WDR72Q3MJ13 1102 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 KRT71Q3SY84 523 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 SHCBP1Q8NEM2 672 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 GSTA1P08263 222 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 GSTA2P09210 222 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 MUTP22033 750 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 ATN1P54259 1190 aaPredicted RBP15.21■□□□□ 0.03
COLCA1-204ENST00000540738 ADAT2Q7Z6V5 191 aaKnown RBP15.21■□□□□ 0.03
COLCA1-204ENST00000540738 TTC13Q8NBP0 860 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 POLR3CQ9BUI4 534 aaPredicted RBP15.21■□□□□ 0.03
COLCA1-204ENST00000540738 DDX23Q9BUQ8 820 aaKnown RBP15.21■□□□□ 0.03
COLCA1-204ENST00000540738 POLD4Q9HCU8 107 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 TJP2Q9UDY2 1190 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 SNX9Q9Y5X1 595 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 TMEM88BA6NKF7 163 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 HPDP32754 393 aaPredicted RBP15.21■□□□□ 0.03
COLCA1-204ENST00000540738 PDE1BQ01064 536 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 PPP6R3Q5H9R7 873 aaPredicted RBP15.21■□□□□ 0.03
COLCA1-204ENST00000540738 C11orf57Q6ZUT1 292 aaPredicted RBP15.21■□□□□ 0.03
COLCA1-204ENST00000540738 FBXO16Q8IX29 292 aaPredicted RBP15.21■□□□□ 0.03
COLCA1-204ENST00000540738 PBKQ96KB5 322 aa15.21■□□□□ 0.03
COLCA1-204ENST00000540738 CNOT8Q9UFF9 292 aaKnown RBP15.21■□□□□ 0.03
COLCA1-204ENST00000540738 CLCN1P35523 988 aa15.21■□□□□ 0.02
COLCA1-204ENST00000540738 DNAJC21Q5F1R6 531 aaKnown RBP15.21■□□□□ 0.02
COLCA1-204ENST00000540738 CCDC121Q6ZUS5 278 aa15.21■□□□□ 0.02
COLCA1-204ENST00000540738 MYBL1P10243 752 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 CBX1P83916 185 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 SP3Q02447 781 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 SGSM1Q2NKQ1 1148 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 KAZALD1Q96I82 304 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 YME1L1Q96TA2 773 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 PPME1Q9Y570 386 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 CAMTA1Q9Y6Y1 1673 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 LGALS16A8MUM7 142 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 H7C4K7 107 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 PGRMC1O00264 195 aaKnown RBP15.2■□□□□ 0.02
COLCA1-204ENST00000540738 PRCPP42785 496 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 RWDD2BP57060 319 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 ANTXR2P58335 489 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 ST8SIA6P61647 398 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 PSMC1P62191 440 aaKnown RBP15.2■□□□□ 0.02
COLCA1-204ENST00000540738 LRRC71Q8N4P6 559 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.2■□□□□ 0.02
COLCA1-204ENST00000540738 XPNPEP3Q9NQH7 507 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 HSPBP1Q9NZL4 362 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 RGS16O15492 202 aaPredicted RBP15.2■□□□□ 0.02
COLCA1-204ENST00000540738 CABYRO75952 493 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 ECEL1O95672 775 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 CLTAP09496 248 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 NMT1P30419 496 aaKnown RBP15.2■□□□□ 0.02
COLCA1-204ENST00000540738 ALDH1A3P47895 512 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 MAPRE1Q15691 268 aaKnown RBP15.2■□□□□ 0.02
COLCA1-204ENST00000540738 EFHBQ8N7U6 833 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 TAP1Q03518 808 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 METTL7BQ6UX53 244 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 CD302Q8IX05 232 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 TAB3Q8N5C8 712 aaPredicted RBP15.2■□□□□ 0.02
COLCA1-204ENST00000540738 NHEJ1Q9H9Q4 299 aaPredicted RBP15.2■□□□□ 0.02
COLCA1-204ENST00000540738 IRAK4Q9NWZ3 460 aa15.2■□□□□ 0.02
COLCA1-204ENST00000540738 GTF2F1P35269 517 aaKnown RBP eCLIP15.19■□□□□ 0.02
COLCA1-204ENST00000540738 TROAPQ12815 778 aa15.19■□□□□ 0.02
COLCA1-204ENST00000540738 APOBEC3HQ6NTF7 200 aaKnown RBP15.19■□□□□ 0.02
COLCA1-204ENST00000540738 DHX38Q92620 1227 aaKnown RBP15.19■□□□□ 0.02
COLCA1-204ENST00000540738 EMSYQ7Z589 1322 aa15.19■□□□□ 0.02
COLCA1-204ENST00000540738 MAP2P11137 1827 aaKnown RBP15.19■□□□□ 0.02
COLCA1-204ENST00000540738 MAP3K7O43318 606 aa15.19■□□□□ 0.02
COLCA1-204ENST00000540738 ERVK-9P63128 1117 aa15.19■□□□□ 0.02
COLCA1-204ENST00000540738 ERVK-24P63145 666 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms