RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 SUPT6HQ7KZ85 1726 aaKnown RBP9.28□□□□□ -0.92
YBX3-208ENST00000540447 SMIM31A0A1B0GVY4 71 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 PI4K2BG5E9Z4 385 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 CYP2E1P05181 493 aaPredicted RBP9.28□□□□□ -0.92
YBX3-208ENST00000540447 CCDC166P0CW27 439 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 GSTO1P78417 241 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 ARMC4Q5T2S8 1044 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 SAC3D1A6NKF1 404 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 PSMD14O00487 310 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 RGS5O15539 181 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 PSTPIP1O43586 416 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 ATF4P18848 351 aaPredicted RBP9.28□□□□□ -0.92
YBX3-208ENST00000540447 SMARCA1P28370 1054 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 PUDPQ08623 228 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 TBCCQ15814 346 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 KRT39Q6A163 491 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 CCDC81Q6ZN84 652 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 HPS1Q92902 700 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 SLC13A1Q9BZW2 595 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 TRIM45Q9H8W5 580 aaPredicted RBP9.28□□□□□ -0.92
YBX3-208ENST00000540447 EXOSC4Q9NPD3 245 aaKnown RBP9.28□□□□□ -0.92
YBX3-208ENST00000540447 GTSE1Q9NYZ3 720 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 TTC21BQ7Z4L5 1316 aa9.27□□□□□ -0.92
YBX3-208ENST00000540447 PTPN23Q9H3S7 1636 aa9.27□□□□□ -0.92
YBX3-208ENST00000540447 RGS20O76081 388 aa9.27□□□□□ -0.92
YBX3-208ENST00000540447 SOX6P35712 828 aa9.27□□□□□ -0.92
YBX3-208ENST00000540447 CTTNQ14247 550 aaKnown RBP9.27□□□□□ -0.92
YBX3-208ENST00000540447 ANGPT1Q15389 498 aa9.27□□□□□ -0.92
YBX3-208ENST00000540447 CCDC137Q6PK04 289 aaKnown RBP9.27□□□□□ -0.92
YBX3-208ENST00000540447 ATP6V1E2Q96A05 226 aa9.27□□□□□ -0.92
YBX3-208ENST00000540447 GRIP2Q9C0E4 1043 aa9.27□□□□□ -0.92
YBX3-208ENST00000540447 ISCUQ9H1K1 167 aa9.27□□□□□ -0.92
YBX3-208ENST00000540447 CLIC5Q9NZA1 410 aa9.27□□□□□ -0.92
YBX3-208ENST00000540447 ZNF212Q9UDV6 495 aa9.27□□□□□ -0.92
YBX3-208ENST00000540447 IGF1RP08069 1367 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 TTC26A0AVF1 554 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 TNFRSF21O75509 655 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 CHEK2O96017 543 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 ALBP02768 609 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 FOXD4Q12950 439 aaPredicted RBP9.27□□□□□ -0.93
YBX3-208ENST00000540447 RALGDSQ12967 914 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 MPP3Q13368 585 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 KRT72Q14CN4 511 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 REXO1L1PQ8IX06 675 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 C1orf50Q9BV19 199 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 C1orf112Q9NSG2 853 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 CYP39A1Q9NYL5 469 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 SEL1LQ9UBV2 794 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 FKBP3Q00688 224 aaKnown RBP9.27□□□□□ -0.93
YBX3-208ENST00000540447 CDC37Q16543 378 aaPredicted RBP9.27□□□□□ -0.93
YBX3-208ENST00000540447 KIAA1755Q5JYT7 1200 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 COL23A1Q86Y22 540 aaPredicted RBP9.27□□□□□ -0.93
YBX3-208ENST00000540447 FOXP1Q9H334 677 aaPredicted RBP9.27□□□□□ -0.93
YBX3-208ENST00000540447 RNPEPL1Q9HAU8 725 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 C20orf96Q9NUD7 363 aaPredicted RBP9.27□□□□□ -0.93
YBX3-208ENST00000540447 LRRC53A6NM62 1247 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 AIM2O14862 343 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 USP1O94782 785 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 ATP6V1C1P21283 382 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 MAGEA8P43361 318 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 ZNF211Q13398 564 aaPredicted RBP9.27□□□□□ -0.93
YBX3-208ENST00000540447 TAF12Q16514 161 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 RESP18Q5W5W9 173 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 ZNF280DQ6N043 979 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 DDX17Q92841 729 aaKnown RBP9.27□□□□□ -0.93
YBX3-208ENST00000540447 CCDC127Q96BQ5 260 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 SYTL2Q9HCH5 934 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 RPRD1BQ9NQG5 326 aaKnown RBP9.27□□□□□ -0.93
YBX3-208ENST00000540447 WDR64B1ANS9 1081 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 MATN2O00339 956 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 MYL1P05976 194 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 FESP07332 822 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 ETS2P15036 469 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 MFAP3P55082 362 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 YWHAHQ04917 246 aaPredicted RBP9.27□□□□□ -0.93
YBX3-208ENST00000540447 CNGA2Q16280 664 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 PPP6R3Q5H9R7 873 aaPredicted RBP9.27□□□□□ -0.93
YBX3-208ENST00000540447 RIBC1Q8N443 379 aaPredicted RBP9.27□□□□□ -0.93
YBX3-208ENST00000540447 CITED4Q96RK1 184 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 DBNDD2Q9BQY9 259 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 PHTF1Q9UMS5 762 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 PPIP5K1Q6PFW1 1433 aa9.27□□□□□ -0.93
YBX3-208ENST00000540447 RAD51BO15315 384 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 RAD51CO43502 376 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 NR2F2P24468 414 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 PTK2BQ14289 1009 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 G2E3Q7L622 706 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 FAM178BQ8IXR5 827 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 GALNT6Q8NCL4 622 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 MAP4K1Q92918 833 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 ZBTB18Q99592 522 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 APOL6Q9BWW8 343 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 ANKZF1Q9H8Y5 726 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 CIDEBQ9UHD4 219 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 IPO11Q9UI26 975 aaKnown RBP9.26□□□□□ -0.93
YBX3-208ENST00000540447 A8MXQ7 604 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 OR52Z1P0C646 297 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 TNNI1P19237 187 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 ADAM17P78536 824 aa9.26□□□□□ -0.93
YBX3-208ENST00000540447 SCRN3Q0VDG4 424 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 399.5 ms