RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 MRPL42Q9Y6G3 142 aaKnown RBP7.32□□□□□ -1.24
USP28-202ENST00000535607 CARMIL3Q8ND23 1372 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 AFDNP55196 1824 aaKnown RBP7.31□□□□□ -1.24
USP28-202ENST00000535607 WDR19Q8NEZ3 1342 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 SH3TC1Q8TE82 1336 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 LAMB2P55268 1798 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 A0A0D9SFI3 127 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 FAM237AA0A1B0GTK4 181 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 PI4KAP2A4QPH2 592 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 PRR19A6NJB7 356 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 H0YHG0 523 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 H3BQF6 201 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 CD3EP07766 207 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 SYPP08247 313 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 NBPF7P0C2Y1 421 aaPredicted RBP7.31□□□□□ -1.24
USP28-202ENST00000535607 MYL6BP14649 208 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 PFKFB1P16118 471 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 PPP2R2AP63151 447 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 PRKCQQ04759 706 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 PPFIA1Q13136 1202 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 STIM1Q13586 685 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 SLC39A14Q15043 492 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 TXNRD1Q16881 649 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 DPY19L1Q2PZI1 675 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 SDE2Q6IQ49 451 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 LRRC31Q6UY01 552 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 COPS6Q7L5N1 327 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 PTF1AQ7RTS3 328 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 ARHGEF39Q8N4T4 335 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 PI4KAP1Q8N8J0 262 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 NAT16Q8N8M0 369 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 LINS1Q8NG48 757 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 TCTN2Q96GX1 697 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 CCDC140Q96MF4 163 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 RUFY1Q96T51 708 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 PYM1Q9BRP8 204 aaKnown RBP7.31□□□□□ -1.24
USP28-202ENST00000535607 HDAC8Q9BY41 377 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 SIL1Q9H173 461 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 DUSP15Q9H1R2 295 aaPredicted RBP7.31□□□□□ -1.24
USP28-202ENST00000535607 BOLA2Q9H3K6 86 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 CXorf56Q9H5V9 222 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 SUSD2Q9UGT4 822 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 LCMT1Q9UIC8 334 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 VAV3Q9UKW4 847 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 SLC5A6Q9Y289 635 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 ZNF652Q9Y2D9 606 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 EMC9Q9Y3B6 208 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 SPEF2Q9C093 1822 aa7.31□□□□□ -1.24
USP28-202ENST00000535607 UTYO14607 1347 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 SALL1Q9NSC2 1324 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 LOC102724159A0A0B4J2E5 919 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 GOLGA6L7A0A1B0GV03 622 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 A0A1W2PQU0 124 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 SHISA3A0PJX4 238 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 H0Y8X5 98 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 GRM8O00222 908 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 BIN1O00499 593 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 RPS6KA4O75676 772 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 IPO7O95373 1038 aaKnown RBP7.3□□□□□ -1.24
USP28-202ENST00000535607 ANXA1P04083 346 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 A1BGP04217 495 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 SNRPB2P08579 225 aaKnown RBP7.3□□□□□ -1.24
USP28-202ENST00000535607 PDIA3P30101 505 aaKnown RBP7.3□□□□□ -1.24
USP28-202ENST00000535607 SEPHS1P49903 392 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 CDR1P51861 262 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 APBA1Q02410 837 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 SPAG1Q07617 926 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 DRP2Q13474 957 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 PLCB4Q15147 1175 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 PWP2Q15269 919 aaKnown RBP7.3□□□□□ -1.24
USP28-202ENST00000535607 SAFBQ15424 915 aaKnown RBP eCLIP7.3□□□□□ -1.24
USP28-202ENST00000535607 ZNF569Q5MCW4 686 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 CRTC3Q6UUV7 619 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 CLEC4GQ6UXB4 293 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 RNF111Q6ZNA4 994 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 TRIM59Q8IWR1 403 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 FLAD1Q8NFF5 587 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 CABS1Q96KC9 395 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 WDR24Q96S15 920 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 TCFL5Q9UL49 500 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 RNF112Q9ULX5 631 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 PLAGL2Q9UPG8 496 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 MAP3K2Q9Y2U5 619 aa7.3□□□□□ -1.24
USP28-202ENST00000535607 ITIH6Q6UXX5 1313 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 NUP98P52948 1817 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 LAMA4Q16363 1823 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 RIC1Q4ADV7 1423 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 CCDC163A0A0D9SF12 145 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 GOLGA6CA6NDK9 693 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 SHOX2O60902 331 aaPredicted RBP7.29□□□□□ -1.24
USP28-202ENST00000535607 GOLGA6DP0CG33 693 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 HOXC12P31275 282 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 BMP8BP34820 402 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 NF2P35240 595 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 TDO2P48775 406 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 EXOSC10Q01780 885 aaKnown RBP7.29□□□□□ -1.24
USP28-202ENST00000535607 EGR3Q06889 387 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 DDR1Q08345 913 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 NEDD9Q14511 834 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 IMMTQ16891 758 aaKnown RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms