RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 INO80BQ9C086 356 aaPredicted RBP17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 MFSD1Q9H3U5 465 aa17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 NRDE2Q9H7Z3 1164 aa17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 DNAJB4Q9UDY4 337 aa17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 LIMD1Q9UGP4 676 aa17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 TPCN1Q9ULQ1 816 aa17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 PCDHA4Q9UN74 947 aa17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 SPTBN2O15020 2390 aa17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 IGKV6-21A0A0C4DH24 114 aa17.6■□□□□ 0.41
CHMP4A-207ENST00000533523 SSBP05455 408 aaKnown RBP eCLIP17.6■□□□□ 0.41
CHMP4A-207ENST00000533523 SLC11A1P49279 550 aa17.6■□□□□ 0.41
CHMP4A-207ENST00000533523 MCM2P49736 904 aa17.6■□□□□ 0.41
CHMP4A-207ENST00000533523 SCRN1Q12765 414 aa17.6■□□□□ 0.41
CHMP4A-207ENST00000533523 GIT2Q14161 759 aa17.6■□□□□ 0.41
CHMP4A-207ENST00000533523 BECN1Q14457 450 aa17.6■□□□□ 0.41
CHMP4A-207ENST00000533523 ATAT1Q5SQI0 421 aa17.6■□□□□ 0.41
CHMP4A-207ENST00000533523 TMC5Q6UXY8 1006 aa17.6■□□□□ 0.41
CHMP4A-207ENST00000533523 KSR1Q8IVT5 923 aa17.6■□□□□ 0.41
CHMP4A-207ENST00000533523 ETNPPLQ8TBG4 499 aa17.6■□□□□ 0.41
CHMP4A-207ENST00000533523 URGCPQ8TCY9 931 aa17.6■□□□□ 0.41
CHMP4A-207ENST00000533523 TRAIPQ9BWF2 469 aa17.6■□□□□ 0.41
CHMP4A-207ENST00000533523 STK36Q9NRP7 1315 aa17.6■□□□□ 0.41
CHMP4A-207ENST00000533523 MTCL1Q9Y4B5 1905 aaKnown RBP17.6■□□□□ 0.41
CHMP4A-207ENST00000533523 B4GALT3O60512 393 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 MAFO75444 373 aaPredicted RBP17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 STBD1O95210 358 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 GALTP07902 379 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 XBP1P17861 261 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 NUBP1P53384 320 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 PTPN14Q15678 1187 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 CWF19L1Q69YN2 538 aaKnown RBP17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 GALNT17Q6IS24 598 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 ZDHHC14Q8IZN3 488 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 BLIDQ8IZY5 108 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 SLC22A17Q8WUG5 538 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 JPH2Q9BR39 696 aaPredicted RBP17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 VN1R3Q9BXE9 311 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 SFXN1Q9H9B4 322 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 DDX25Q9UHL0 483 aaKnown RBP17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 IRAK3Q9Y616 596 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 ACACBO00763 2458 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 GPR179Q6PRD1 2367 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 FANCMQ8IYD8 2048 aa17.59■□□□□ 0.41
CHMP4A-207ENST00000533523 CYP3A7-CYP3A51PA0A087WV96 503 aa17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 OFD1O75665 1012 aa17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 CYP3A7P24462 503 aa17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 PSMC5P62195 406 aa17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 ASTLQ6HA08 431 aaPredicted RBP17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 B3GNT9Q6UX72 402 aa17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 CCDC149Q6ZUS6 474 aa17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 ANO5Q75V66 913 aa17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 PPFIBP1Q86W92 1011 aa17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 WASF1Q92558 559 aa17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 PGBD4Q96DM1 585 aa17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 EMILIN2Q9BXX0 1053 aa17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 BMP2KQ9NSY1 1161 aaPredicted RBP17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 AGPAT5Q9NUQ2 364 aa17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 PCDHB2Q9Y5E7 798 aa17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 COL4A3BPQ9Y5P4 624 aa17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 CHD8Q9HCK8 2581 aa17.58■□□□□ 0.4
CHMP4A-207ENST00000533523 USP24Q9UPU5 2620 aa17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 K7ELQ4 463 aaPredicted RBP17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 SLC37A4O43826 429 aa17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 KLRC2P26717 231 aa17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 NPEPPSP55786 919 aa17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 NONOQ15233 471 aaKnown RBP eCLIP17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 INF2Q27J81 1249 aa17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 ERMP1Q7Z2K6 904 aa17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 ZNF280BQ86YH2 543 aa17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 PLCD3Q8N3E9 789 aa17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 DAGLBQ8NCG7 672 aa17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 FLCNQ8NFG4 579 aa17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 SLC7A3Q8WY07 619 aa17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 ACSF2Q96CM8 615 aaPredicted RBP17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 FAM193BQ96PV7 902 aaPredicted RBP17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 RSAD1Q9HA92 442 aa17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 CYP26B1Q9NR63 512 aa17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 LIMCH1Q9UPQ0 1083 aa17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 USTQ9Y2C2 406 aa17.57■□□□□ 0.4
CHMP4A-207ENST00000533523 DOCK6Q96HP0 2047 aa17.56■□□□□ 0.4
CHMP4A-207ENST00000533523 ZNF623O75123 536 aa17.56■□□□□ 0.4
CHMP4A-207ENST00000533523 LETM2Q2VYF4 491 aa17.56■□□□□ 0.4
CHMP4A-207ENST00000533523 MOXD1Q6UVY6 613 aa17.56■□□□□ 0.4
CHMP4A-207ENST00000533523 AGMOQ6ZNB7 445 aa17.56■□□□□ 0.4
CHMP4A-207ENST00000533523 ADSSL1Q8N142 457 aa17.56■□□□□ 0.4
CHMP4A-207ENST00000533523 PSPC1Q8WXF1 523 aaKnown RBP17.56■□□□□ 0.4
CHMP4A-207ENST00000533523 GTF3C6Q969F1 213 aa17.56■□□□□ 0.4
CHMP4A-207ENST00000533523 CEP170P1Q96L14 293 aa17.56■□□□□ 0.4
CHMP4A-207ENST00000533523 MBOAT7Q96N66 472 aa17.56■□□□□ 0.4
CHMP4A-207ENST00000533523 AIFM3Q96NN9 605 aa17.56■□□□□ 0.4
CHMP4A-207ENST00000533523 IFT122Q9HBG6 1241 aa17.56■□□□□ 0.4
CHMP4A-207ENST00000533523 MAP1BP46821 2468 aaKnown RBP17.56■□□□□ 0.4
CHMP4A-207ENST00000533523 CNTNAP2Q9UHC6 1331 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 M0R2N6 131 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 EML1O00423 815 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 C2CD2LO14523 706 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 PI15O43692 258 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 URODP06132 367 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 SRGAP2CP0DJJ0 459 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 QARSP47897 775 aaKnown RBP17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms