RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SLFN12Q8IYM2 578 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 URGCPQ8TCY9 931 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 SLC22A17Q8WUG5 538 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 TCP11Q8WWU5 503 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 AUTS2Q8WXX7 1259 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 WASF1Q92558 559 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 TNFRSF25Q93038 417 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 RIPOR3Q96MK2 946 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 ZSWIM4Q9H7M6 989 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 RSAD1Q9HA92 442 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 PPP4R2Q9NY27 417 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 ORC3Q9UBD5 711 aaPredicted RBP12.68□□□□□ -0.38
VPS28-214ENST00000531032 STK39Q9UEW8 545 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 DENND4AQ7Z401 1863 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 FAM205CA6NFA0 338 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 C2CD4DB7Z1M9 353 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 ASAP2O43150 1006 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 DTNBO60941 627 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 DDHD2O94830 711 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 EPCAMP16422 314 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 AFF1P51825 1210 aaKnown RBP12.67□□□□□ -0.38
VPS28-214ENST00000531032 PTPN5P54829 565 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 ANAPC15P60006 121 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 CTTNQ14247 550 aaKnown RBP12.67□□□□□ -0.38
VPS28-214ENST00000531032 ANKRD1Q15327 319 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 PCBP1Q15365 356 aaKnown RBP eCLIP12.67□□□□□ -0.38
VPS28-214ENST00000531032 PTPN14Q15678 1187 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 NCAPH2Q6IBW4 605 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 KIAA1841Q6NSI8 718 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 RNF149Q8NC42 400 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 DYDC2Q96IM9 177 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 TMEM175Q9BSA9 504 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 GBP3Q9H0R5 595 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 TSHZ2Q9NRE2 1034 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 BMP2KQ9NSY1 1161 aaPredicted RBP12.67□□□□□ -0.38
VPS28-214ENST00000531032 KANSL3Q9P2N6 904 aa12.67□□□□□ -0.38
VPS28-214ENST00000531032 ZBTB39O15060 712 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 INPPL1O15357 1258 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 MARCH6O60337 910 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 SLITRK3O94933 977 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 LYPLA2O95372 231 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 BAG4O95429 457 aaKnown RBP12.66□□□□□ -0.38
VPS28-214ENST00000531032 WEE2P0C1S8 567 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 FDPSP14324 419 aaKnown RBP12.66□□□□□ -0.38
VPS28-214ENST00000531032 NCLP19338 710 aaKnown RBP12.66□□□□□ -0.38
VPS28-214ENST00000531032 KRT2P35908 639 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 AK2P54819 239 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 VCPP55072 806 aaKnown RBP12.66□□□□□ -0.38
VPS28-214ENST00000531032 CYP4A11Q02928 519 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 TCF15Q12870 199 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 NR5A1Q13285 461 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 MTMR3Q13615 1198 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 XKR9Q5GH70 373 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 RARS2Q5T160 578 aaKnown RBP12.66□□□□□ -0.38
VPS28-214ENST00000531032 ZBTB33Q86T24 672 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 PPFIBP1Q86W92 1011 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 IFNLR1Q8IU57 520 aaPredicted RBP12.66□□□□□ -0.38
VPS28-214ENST00000531032 C12orf76Q8N812 135 aaPredicted RBP12.66□□□□□ -0.38
VPS28-214ENST00000531032 TMEM87AQ8NBN3 555 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 KREMEN2Q8NCW0 462 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 CNNM3Q8NE01 707 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 MTRQ99707 1265 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 XPNPEP1Q9NQW7 623 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 SORCS3Q9UPU3 1222 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 USTQ9Y2C2 406 aa12.66□□□□□ -0.38
VPS28-214ENST00000531032 TSPAN1O60635 241 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 LILRB3O75022 631 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 ERLIN2O94905 339 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 BRD1O95696 1058 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 AXLP30530 894 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 PTENP60484 403 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 POU5F1BQ06416 359 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 MXD4Q14582 209 aaPredicted RBP12.65□□□□□ -0.38
VPS28-214ENST00000531032 ATAT1Q5SQI0 421 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 ERICH6BQ5W0A0 696 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 KANK3Q6NY19 840 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 CABP7Q86V35 215 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 TPH2Q8IWU9 490 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 UBALD2Q8IYN6 164 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 ZDHHC14Q8IZN3 488 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 TDRD5Q8NAT2 981 aaKnown RBP12.65□□□□□ -0.38
VPS28-214ENST00000531032 SMG8Q8ND04 991 aaKnown RBP12.65□□□□□ -0.38
VPS28-214ENST00000531032 GTF3C6Q969F1 213 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 CCDC51Q96ER9 411 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 FAM193BQ96PV7 902 aaPredicted RBP12.65□□□□□ -0.38
VPS28-214ENST00000531032 PHOX2BQ99453 314 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 HSD17B14Q9BPX1 270 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 EIF2AK1Q9BQI3 630 aaKnown RBP12.65□□□□□ -0.38
VPS28-214ENST00000531032 SFXN1Q9H9B4 322 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 BRMS1Q9HCU9 246 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 UBN1Q9NPG3 1134 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 IPPQ9Y573 584 aa12.65□□□□□ -0.38
VPS28-214ENST00000531032 NRP1O14786 923 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 DGAT1O75907 488 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 LARGE1O95461 756 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 POMCP01189 267 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 ALDH2P05091 517 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 CNPP09543 421 aaKnown RBP12.64□□□□□ -0.39
VPS28-214ENST00000531032 AVPR2P30518 371 aa12.64□□□□□ -0.39
VPS28-214ENST00000531032 CLCN4P51793 760 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms