RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 DNAI1Q9UI46 699 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 CNOT11Q9UKZ1 510 aaKnown RBP4.12□□□□□ -1.75
CD44-229ENST00000528672 INTUQ9ULD6 942 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 DAAM1Q9Y4D1 1078 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 A0A0U1RQG5 324 aaPredicted RBP4.11□□□□□ -1.75
CD44-229ENST00000528672 C9orf118A6NHY6 69 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 ENO2P09104 434 aaPredicted RBP4.11□□□□□ -1.75
CD44-229ENST00000528672 ZNF888P0CJ79 500 aaPredicted RBP4.11□□□□□ -1.75
CD44-229ENST00000528672 PAX3P23760 479 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 GJA4P35212 333 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 ECE1P42892 770 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 HTR3AP46098 478 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 RRADP55042 308 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 ADCY1Q08828 1119 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 EPHA7Q15375 998 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 TBR1Q16650 682 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 PRR31Q5SQ13 230 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 MCTP2Q6DN12 878 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 B3GNT9Q6UX72 402 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 KCNK18Q7Z418 384 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 CATIPQ7Z7H3 387 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 MORC1Q86VD1 984 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 CARFQ8N187 725 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 OR2I1PQ8NGU4 316 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 SSH1Q8WYL5 1049 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 DPF2Q92785 391 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 EVI5LQ96CN4 794 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 MAML3Q96JK9 1138 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 TEPSINQ96N21 525 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 TAAR9Q96RI9 348 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 ORAI2Q96SN7 254 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 ELAC2Q9BQ52 826 aaKnown RBP4.11□□□□□ -1.75
CD44-229ENST00000528672 KCTD10Q9H3F6 313 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 MTG2Q9H4K7 406 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 PRDM16Q9HAZ2 1276 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 DDX21Q9NR30 783 aaKnown RBP eCLIP4.11□□□□□ -1.75
CD44-229ENST00000528672 GALNT8Q9NY28 637 aa4.11□□□□□ -1.75
CD44-229ENST00000528672 PUF60Q9UHX1 559 aaKnown RBP4.11□□□□□ -1.75
CD44-229ENST00000528672 CCDC189A1A4V9 331 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 SH3BP5O60239 455 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 KNG1P01042 644 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 AGXTP21549 392 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 ENPP1P22413 925 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 KCNQ1P51787 676 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 SLURP1P55000 103 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 ADKP55263 362 aaKnown RBP4.1□□□□□ -1.75
CD44-229ENST00000528672 ADCY2Q08462 1091 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 ZNF267Q14586 743 aaPredicted RBP4.1□□□□□ -1.75
CD44-229ENST00000528672 FSCN1Q16658 493 aaKnown RBP4.1□□□□□ -1.75
CD44-229ENST00000528672 GRAMD1BQ3KR37 738 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 ZFYVE27Q5T4F4 411 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 ERICH6BQ5W0A0 696 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 CHST15Q7LFX5 561 aaPredicted RBP4.1□□□□□ -1.75
CD44-229ENST00000528672 KANSL1Q7Z3B3 1105 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 ZDHHC14Q8IZN3 488 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 C7orf31Q8N865 590 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 IGDCC4Q8TDY8 1250 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 TNIP3Q96KP6 325 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 CLIC6Q96NY7 704 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 PTPN18Q99952 460 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 XYLT2Q9H1B5 865 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 ZCCHC4Q9H5U6 513 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 FAM204AQ9H8W3 233 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 PPCSQ9HAB8 311 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 USP36Q9P275 1121 aaKnown RBP4.1□□□□□ -1.75
CD44-229ENST00000528672 GPR45Q9Y5Y3 372 aa4.1□□□□□ -1.75
CD44-229ENST00000528672 PMM2O15305 246 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 PFKMP08237 780 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 POU2F2P09086 479 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 IL13P35225 146 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 KCNC1P48547 511 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 FNTBP49356 437 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 SARSP49591 514 aaKnown RBP4.09□□□□□ -1.75
CD44-229ENST00000528672 USP14P54578 494 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 ZNF280AP59817 542 aaPredicted RBP4.09□□□□□ -1.75
CD44-229ENST00000528672 HERVK_113P62684 666 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 CD69Q07108 199 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 PPARAQ07869 468 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 GALEQ14376 348 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 RALBP1Q15311 655 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 UGT8Q16880 541 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 TTC38Q5R3I4 469 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 ATAT1Q5SQI0 421 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 CYB5RLQ6IPT4 315 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 TRMT10BQ6PF06 316 aaKnown RBP4.09□□□□□ -1.75
CD44-229ENST00000528672 DBX2Q6ZNG2 339 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 ESPNLQ6ZVH7 1005 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 SRGAP1Q7Z6B7 1085 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 NME9Q86XW9 330 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 GRAMD1CQ8IYS0 662 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 FAM43AQ8N2R8 423 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 MSL3Q8N5Y2 521 aaKnown RBP4.09□□□□□ -1.75
CD44-229ENST00000528672 ENAHQ8N8S7 591 aaPredicted RBP4.09□□□□□ -1.75
CD44-229ENST00000528672 HPS3Q969F9 1004 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 MAP3K14Q99558 947 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 OR10A5Q9H207 317 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 DLL4Q9NR61 685 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 ZNF277Q9NRM2 450 aaPredicted RBP4.09□□□□□ -1.75
CD44-229ENST00000528672 PHTF1Q9UMS5 762 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 DNM3Q9UQ16 869 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms