RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 MOCS3O95396 460 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 LDHAP00338 332 aaKnown RBP16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 PIGRP01833 764 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 TRIM49P0CI25 452 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 TRIM49CP0CI26 452 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 ARL2P36404 184 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 SLC26A2P50443 739 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 FKBP1BP68106 108 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 CCNA1P78396 465 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 APBA1Q02410 837 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 SNRNP35Q16560 246 aaKnown RBP16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 MTERF2Q49AM1 385 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 KRT39Q6A163 491 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 SMYD5Q6GMV2 418 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 CCDC70Q6NSX1 233 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 GPAT2Q6NUI2 795 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 ZNF572Q7Z3I7 529 aaPredicted RBP16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 GPD1LQ8N335 351 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 HNRNPLLQ8WVV9 542 aaKnown RBP16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 JPH2Q9BR39 696 aaPredicted RBP16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 SH2D3AQ9BRG2 576 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 AZI2Q9H6S1 392 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 TMEM134Q9H6X4 195 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 MLXIPQ9HAP2 919 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 TMEM8AQ9HCN3 771 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 DDX41Q9UJV9 622 aaKnown RBP16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 RAB21Q9UL25 225 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 NENFQ9UMX5 172 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 TFR2Q9UP52 801 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 COQ4Q9Y3A0 265 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 PCDHGC5Q9Y5F6 944 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 STYXL1Q9Y6J8 313 aa16.03■□□□□ 0.16
ECHDC1-220ENST00000528402 ENC1O14682 589 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 EVI5O60447 810 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 H2AFZP0C0S5 128 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 ATP4AP20648 1035 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 ADSSP30520 456 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 PAFAH1B1P43034 410 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 MXI1P50539 228 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 CLCN6P51797 869 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 SP4Q02446 784 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 KIF22Q14807 665 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 TARBP2Q15633 366 aaKnown RBP16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 DLK2Q6UY11 383 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 H2AFVQ71UI9 128 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 PLPPR4Q7Z2D5 763 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 PARD3BQ8TEW8 1205 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 TCP11Q8WWU5 503 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 BBXQ8WY36 941 aaPredicted RBP16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 BSNDQ8WZ55 320 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 POMGNT1Q8WZA1 660 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 RUBCNQ92622 972 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 PARD6BQ9BYG5 372 aa16.02■□□□□ 0.16
ECHDC1-220ENST00000528402 ZNF233A6NK53 670 aa16.02■□□□□ 0.15
ECHDC1-220ENST00000528402 ANKRD63C9JTQ0 380 aa16.02■□□□□ 0.15
ECHDC1-220ENST00000528402 CES2O00748 559 aa16.02■□□□□ 0.15
ECHDC1-220ENST00000528402 ZC3H11AO75152 810 aaKnown RBP eCLIP16.02■□□□□ 0.15
ECHDC1-220ENST00000528402 LGR5O75473 907 aa16.02■□□□□ 0.15
ECHDC1-220ENST00000528402 TNFAIP3P21580 790 aa16.02■□□□□ 0.15
ECHDC1-220ENST00000528402 MFAP3P55082 362 aa16.02■□□□□ 0.15
ECHDC1-220ENST00000528402 PPP3CAQ08209 521 aa16.02■□□□□ 0.15
ECHDC1-220ENST00000528402 TRMT1LQ7Z2T5 733 aaKnown RBP16.02■□□□□ 0.15
ECHDC1-220ENST00000528402 SLC30A5Q8TAD4 765 aa16.02■□□□□ 0.15
ECHDC1-220ENST00000528402 DEPTORQ8TB45 409 aa16.02■□□□□ 0.15
ECHDC1-220ENST00000528402 ARFGAP3Q9NP61 516 aa16.02■□□□□ 0.15
ECHDC1-220ENST00000528402 CAPN6Q9Y6Q1 641 aa16.02■□□□□ 0.15
ECHDC1-220ENST00000528402 ZNFX1Q9P2E3 1918 aaKnown RBP16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 TARSL2A2RTX5 802 aaKnown RBP16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 K7ERI5 159 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 HNRNPDLO14979 420 aaKnown RBP16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 EXTL3O43909 919 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 GGPS1O95749 300 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 CETPP11597 493 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 KLRC1P26715 233 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 LIG4P49917 911 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 GPC3P51654 580 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 ERVK-9P63128 1117 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 CELF3Q5SZQ8 465 aaKnown RBP16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 C1orf220Q5T0J3 134 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 IER5Q5VY09 327 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 PHLDB3Q6NSJ2 640 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 ENOSF1Q7L5Y1 443 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 SYCE1Q8N0S2 351 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 CAGE1Q8TC20 777 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 BICD1Q96G01 975 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 CEP89Q96ST8 783 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 OSBPL9Q96SU4 736 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 TMEM117Q9H0C3 514 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 UBE2TQ9NPD8 197 aaPredicted RBP16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 HDAC6Q9UBN7 1215 aa16.01■□□□□ 0.15
ECHDC1-220ENST00000528402 SOCS7O14512 581 aa16■□□□□ 0.15
ECHDC1-220ENST00000528402 MAFO75444 373 aaPredicted RBP16■□□□□ 0.15
ECHDC1-220ENST00000528402 GCLCP48506 637 aaPredicted RBP16■□□□□ 0.15
ECHDC1-220ENST00000528402 GCLMP48507 274 aa16■□□□□ 0.15
ECHDC1-220ENST00000528402 GTF2A2P52657 109 aa16■□□□□ 0.15
ECHDC1-220ENST00000528402 EFNA5P52803 228 aa16■□□□□ 0.15
ECHDC1-220ENST00000528402 DLG4P78352 724 aa16■□□□□ 0.15
ECHDC1-220ENST00000528402 CYP24A1Q07973 514 aa16■□□□□ 0.15
ECHDC1-220ENST00000528402 Q3C1V9 767 aa16■□□□□ 0.15
ECHDC1-220ENST00000528402 EAPPQ56P03 285 aaPredicted RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms