RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 GFRA4Q9GZZ7 299 aa0.29□□□□□ -2.36
RNU6-539P-201ENST00000516665 CASS4Q9NQ75 786 aa0.29□□□□□ -2.36
RNU6-539P-201ENST00000516665 WDR3Q9UNX4 943 aaKnown RBP eCLIP0.29□□□□□ -2.36
RNU6-539P-201ENST00000516665 SQORQ9Y6N5 450 aa0.29□□□□□ -2.36
RNU6-539P-201ENST00000516665 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 H3BRB1 525 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 H7BY64 318 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 GIPC1O14908 333 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 MAFKO60675 156 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 ABLIM3O94929 683 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 PF4P02776 101 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 TRA2BP62995 288 aaKnown RBP0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 LMNB2Q03252 620 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 CYP4F3Q08477 520 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 DBPQ10586 325 aaPredicted RBP0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 RAB33AQ14088 237 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 TCEA2Q15560 299 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 TRIP6Q15654 476 aaKnown RBP0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 DIEXFQ68CQ4 756 aaKnown RBP0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 ZNF449Q6P9G9 518 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 SHC4Q6S5L8 630 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 WNK4Q96J92 1243 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 CPPED1Q9BRF8 314 aaPredicted RBP0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 CDIP1Q9H305 208 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 EPB41L1Q9H4G0 881 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 TUT1Q9H6E5 874 aaKnown RBP0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 BRMS1Q9HCU9 246 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 SLC6A20Q9NP91 592 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 NCKIPSDQ9NZQ3 722 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 CGGBP1Q9UFW8 167 aaPredicted RBP0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 SERGEFQ9UGK8 458 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 ADAMTS5Q9UNA0 930 aa0.28□□□□□ -2.36
RNU6-539P-201ENST00000516665 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 NGFRP08138 427 aa0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 UBTFP17480 764 aaKnown RBP0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 RRP1P56182 461 aaKnown RBP0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 NHLH2Q02577 135 aa0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 TCIRG1Q13488 830 aa0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 MPP2Q14168 576 aa0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 DSC3Q14574 896 aa0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 ZNF772Q68DY9 489 aaPredicted RBP0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 LVRNQ6Q4G3 990 aa0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 VSIG10Q8N0Z9 540 aa0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 NPLOC4Q8TAT6 608 aa0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 DHRS1Q96LJ7 313 aa0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 SPRY4Q9C004 299 aa0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 FOXP1Q9H334 677 aaPredicted RBP0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 GSTO2Q9H4Y5 243 aa0.27□□□□□ -2.37
RNU6-539P-201ENST00000516665 WDR81Q562E7 1941 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 KRIT1O00522 736 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 TLR3O15455 904 aaKnown RBP0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 CFBP00751 764 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 FGBP02675 491 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 TMEM191BP0C7N4 346 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 NHLRC4P0CG21 123 aaPredicted RBP0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 FGF3P11487 239 aaPredicted RBP0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 KRT5P13647 590 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 PRF1P14222 555 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 SREBF1P36956 1147 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 GTF2A2P52657 109 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 SPIDRQ14159 915 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 RBM39Q14498 530 aaKnown RBP0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 DAZAP2Q15038 168 aaPredicted RBP0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 FCN2Q15485 313 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 METTL24Q5JXM2 366 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 PHLDB3Q6NSJ2 640 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 LRSAM1Q6UWE0 723 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 DGLUCYQ7Z3D6 616 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 MSL3Q8N5Y2 521 aaKnown RBP0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 RCBTB1Q8NDN9 531 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 PRSS3P2Q8NHM4 247 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 B4GALNT2Q8NHY0 566 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 GCDHQ92947 438 aaPredicted RBP0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 LPPQ93052 612 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 ZC3H10Q96K80 434 aaKnown RBP0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 MEIS3Q99687 375 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 LSM14BQ9BX40 385 aaKnown RBP0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 CLDND1Q9NY35 253 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 NCDNQ9UBB6 729 aa0.26□□□□□ -2.37
RNU6-539P-201ENST00000516665 CYP2D7A0A087X1C5 515 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 A0A0B4J293 547 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 MEIS3P2A8K0S8 358 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 TUBB4AP04350 444 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 LCP1P13796 627 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 MC4RP32245 332 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 MAPK10P53779 464 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 SOX10P56693 466 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 GRB10Q13322 594 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 NFATC4Q14934 902 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 GAGE13Q4V321 117 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 SUMO4Q6EEV6 95 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 GRAMD4Q6IC98 578 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 BTNL9Q6UXG8 535 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 PNPLA5Q7Z6Z6 429 aaPredicted RBP0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 CLEC14AQ86T13 490 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 PEG10Q86TG7 708 aaKnown RBP0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 GLYCTKQ8IVS8 523 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 ARHGEF39Q8N4T4 335 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 FBF1Q8TES7 1133 aa0.25□□□□□ -2.37
RNU6-539P-201ENST00000516665 RNF31Q96EP0 1072 aa0.25□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms