RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 KIAA2012Q0VF49 1180 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 MAP4K2Q12851 820 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 OS9Q13438 667 aaPredicted RBP6.57□□□□□ -1.36
NUP54-218ENST00000515460 PRSS53Q2L4Q9 553 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 TBC1D9BQ66K14 1250 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 CASC1Q6TDU7 716 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 C2CD5Q86YS7 1000 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 CCDC103Q8IW40 242 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 Q8N1Y9 231 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 TMEM145Q8NBT3 493 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 SGSM3Q96HU1 749 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 ZNF496Q96IT1 587 aaPredicted RBP6.57□□□□□ -1.36
NUP54-218ENST00000515460 CHAMP1Q96JM3 812 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 RBM15Q96T37 977 aaKnown RBP eCLIP6.57□□□□□ -1.363e-11■■■■■ 43.2
NUP54-218ENST00000515460 YIPF4Q9BSR8 244 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 TRIM55Q9BYV6 548 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 TMEFF2Q9UIK5 374 aaPredicted RBP6.57□□□□□ -1.36
NUP54-218ENST00000515460 INVSQ9Y283 1065 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 MYRFQ9Y2G1 1151 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 X6R8D5 127 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 ZNF831Q5JPB2 1677 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 COL15A1P39059 1388 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 ZNF536O15090 1300 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 KIF7Q2M1P5 1343 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 VGLL3A8MV65 326 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 H7BY64 318 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 KCNQ3O43525 872 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 STK10O94804 968 aaKnown RBP6.56□□□□□ -1.36
NUP54-218ENST00000515460 STARD3NLO95772 234 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 A1BGP04217 495 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 BCL6P41182 706 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 ITGA1P56199 1179 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 PPP2R2AP63151 447 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 ADAM17P78536 824 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 LSAMPQ13449 338 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 SLC4A8Q2Y0W8 1093 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 TBC1D10BQ4KMP7 808 aaPredicted RBP6.56□□□□□ -1.36
NUP54-218ENST00000515460 ZNF790Q6PG37 636 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 OTOP1Q7RTM1 612 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 FAM124AQ86V42 546 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 MIB1Q86YT6 1006 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 CKAP2LQ8IYA6 745 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 CELF2-AS1Q8N7Q2 184 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 KREMEN2Q8NCW0 462 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 BRIP1Q9BX63 1249 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 NGRNQ9NPE2 291 aaKnown RBP6.56□□□□□ -1.36
NUP54-218ENST00000515460 RBM28Q9NW13 759 aaKnown RBP6.56□□□□□ -1.36
NUP54-218ENST00000515460 RAI14Q9P0K7 980 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 RALYQ9UKM9 306 aaKnown RBP6.56□□□□□ -1.36
NUP54-218ENST00000515460 ISY1Q9ULR0 285 aaKnown RBP6.56□□□□□ -1.36
NUP54-218ENST00000515460 CARMIL3Q8ND23 1372 aa6.56□□□□□ -1.36
NUP54-218ENST00000515460 A0A1W2PQU0 124 aa6.55□□□□□ -1.36
NUP54-218ENST00000515460 MROH6A6NGR9 719 aa6.55□□□□□ -1.36
NUP54-218ENST00000515460 ARNTLO00327 626 aa6.55□□□□□ -1.36
NUP54-218ENST00000515460 U2SURPO15042 1029 aaKnown RBP6.55□□□□□ -1.36
NUP54-218ENST00000515460 KLF4O43474 513 aa6.55□□□□□ -1.36
NUP54-218ENST00000515460 PLATP00750 562 aa6.55□□□□□ -1.36
NUP54-218ENST00000515460 SF1Q15637 639 aaKnown RBP6.55□□□□□ -1.36
NUP54-218ENST00000515460 PRR5LQ6MZQ0 368 aa6.55□□□□□ -1.36
NUP54-218ENST00000515460 LGI4Q8N135 537 aa6.55□□□□□ -1.36
NUP54-218ENST00000515460 TXNDC5Q8NBS9 432 aaKnown RBP6.55□□□□□ -1.36
NUP54-218ENST00000515460 RCBTB1Q8NDN9 531 aa6.55□□□□□ -1.36
NUP54-218ENST00000515460 ST13P5Q8NFI4 369 aaPredicted RBP6.55□□□□□ -1.36
NUP54-218ENST00000515460 ARMC5Q96C12 935 aa6.55□□□□□ -1.36
NUP54-218ENST00000515460 PHACTR3Q96KR7 559 aa6.55□□□□□ -1.36
NUP54-218ENST00000515460 C8orf49Q96NF6 230 aa6.55□□□□□ -1.36
NUP54-218ENST00000515460 CDX2Q99626 313 aaPredicted RBP6.55□□□□□ -1.36
NUP54-218ENST00000515460 TEX13AQ9BXU3 409 aaPredicted RBP6.55□□□□□ -1.36
NUP54-218ENST00000515460 EPHX3Q9H6B9 360 aa6.55□□□□□ -1.36
NUP54-218ENST00000515460 PCDHA2Q9Y5H9 948 aa6.55□□□□□ -1.36
NUP54-218ENST00000515460 COL5A3P25940 1745 aaPredicted RBP6.54□□□□□ -1.36
NUP54-218ENST00000515460 CAMTA2O94983 1202 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 ZSCAN20P17040 1043 aaPredicted RBP6.54□□□□□ -1.36
NUP54-218ENST00000515460 IL6STP40189 918 aaPredicted RBP6.54□□□□□ -1.36
NUP54-218ENST00000515460 SSR1P43307 286 aaKnown RBP6.54□□□□□ -1.36
NUP54-218ENST00000515460 TEFQ10587 303 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 RAB33AQ14088 237 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 LRIT3Q3SXY7 679 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 SLC35F1Q5T1Q4 408 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 PRAMEF18Q5VWM3 479 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 BORAQ6PGQ7 559 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 NLRP10Q86W26 655 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 FAM126BQ8IXS8 530 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 TTC5Q8N0Z6 440 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 LRRC47Q8N1G4 583 aaKnown RBP6.54□□□□□ -1.36
NUP54-218ENST00000515460 C1orf159Q96HA4 380 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 AARSD1Q9BTE6 412 aaKnown RBP6.54□□□□□ -1.36
NUP54-218ENST00000515460 IER2Q9BTL4 223 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 CCDC94Q9BW85 323 aaPredicted RBP6.54□□□□□ -1.36
NUP54-218ENST00000515460 ZNF652Q9Y2D9 606 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 USP16Q9Y5T5 823 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 NR2E3Q9Y5X4 410 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 MYH14Q7Z406 1995 aaKnown RBP6.54□□□□□ -1.36
NUP54-218ENST00000515460 MAST4O15021 2626 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 HEG1Q9ULI3 1381 aa6.54□□□□□ -1.36
NUP54-218ENST00000515460 PRAMEF22A3QJZ6 481 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 MAFKO60675 156 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 DGKIO75912 1065 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 NKX3-2P78367 333 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 SATB1Q01826 763 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms