RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 SRFP11831 508 aa22.83■■□□□ 1.25
SQSTM1-215ENST00000514093 GNA11P29992 359 aa22.83■■□□□ 1.25
SQSTM1-215ENST00000514093 NONOQ15233 471 aaKnown RBP eCLIP22.83■■□□□ 1.252e-8■■■■□ 21.7
SQSTM1-215ENST00000514093 XKR3Q5GH77 459 aa22.83■■□□□ 1.25
SQSTM1-215ENST00000514093 MIER3Q7Z3K6 550 aa22.83■■□□□ 1.25
SQSTM1-215ENST00000514093 ZNF410Q86VK4 478 aa22.83■■□□□ 1.25
SQSTM1-215ENST00000514093 CMASQ8NFW8 434 aaPredicted RBP22.83■■□□□ 1.25
SQSTM1-215ENST00000514093 CCDC12Q8WUD4 166 aaPredicted RBP22.83■■□□□ 1.25
SQSTM1-215ENST00000514093 PRG3Q9Y2Y8 225 aaPredicted RBP22.83■■□□□ 1.25
SQSTM1-215ENST00000514093 CLUHO75153 1309 aa22.82■■□□□ 1.24
SQSTM1-215ENST00000514093 DDX11L8A8MPP1 907 aa22.82■■□□□ 1.24
SQSTM1-215ENST00000514093 TEX28O15482 410 aa22.82■■□□□ 1.24
SQSTM1-215ENST00000514093 SOD2P04179 222 aa22.82■■□□□ 1.24
SQSTM1-215ENST00000514093 URODP06132 367 aa22.82■■□□□ 1.24
SQSTM1-215ENST00000514093 SP9P0CG40 484 aa22.82■■□□□ 1.24
SQSTM1-215ENST00000514093 RNF20Q5VTR2 975 aa22.82■■□□□ 1.24
SQSTM1-215ENST00000514093 RASEFQ8IZ41 740 aa22.82■■□□□ 1.24
SQSTM1-215ENST00000514093 SMG7Q92540 1137 aaKnown RBP22.82■■□□□ 1.24
SQSTM1-215ENST00000514093 STAMQ92783 540 aa22.82■■□□□ 1.24
SQSTM1-215ENST00000514093 PHKBQ93100 1093 aa22.82■■□□□ 1.24
SQSTM1-215ENST00000514093 RPS6KC1Q96S38 1066 aa22.82■■□□□ 1.24
SQSTM1-215ENST00000514093 RSAD1Q9HA92 442 aa22.82■■□□□ 1.24
SQSTM1-215ENST00000514093 EPS15L1Q9UBC2 864 aa22.82■■□□□ 1.24
SQSTM1-215ENST00000514093 ADH1AP07327 375 aa22.81■■□□□ 1.24
SQSTM1-215ENST00000514093 PUM1Q14671 1186 aaKnown RBP eCLIP22.81■■□□□ 1.24
SQSTM1-215ENST00000514093 TMEM175Q9BSA9 504 aa22.81■■□□□ 1.24
SQSTM1-215ENST00000514093 AGPAT5Q9NUQ2 364 aa22.81■■□□□ 1.24
SQSTM1-215ENST00000514093 MARCH5Q9NX47 278 aa22.81■■□□□ 1.24
SQSTM1-215ENST00000514093 DLGAP2Q9P1A6 1054 aa22.81■■□□□ 1.24
SQSTM1-215ENST00000514093 STK39Q9UEW8 545 aa22.81■■□□□ 1.24
SQSTM1-215ENST00000514093 SIT1Q9Y3P8 196 aa22.81■■□□□ 1.24
SQSTM1-215ENST00000514093 MAFO75444 373 aaPredicted RBP22.8■■□□□ 1.24
SQSTM1-215ENST00000514093 GLUD1P00367 558 aa22.8■■□□□ 1.24
SQSTM1-215ENST00000514093 OR1G1P47890 313 aa22.8■■□□□ 1.24
SQSTM1-215ENST00000514093 PLA2G4FQ68DD2 849 aa22.8■■□□□ 1.24
SQSTM1-215ENST00000514093 POTEGQ6S5H5 508 aa22.8■■□□□ 1.24
SQSTM1-215ENST00000514093 MRPL10Q7Z7H8 261 aaKnown RBP22.8■■□□□ 1.24
SQSTM1-215ENST00000514093 PALB2Q86YC2 1186 aa22.8■■□□□ 1.24
SQSTM1-215ENST00000514093 C1orf210Q8IVY1 113 aa22.8■■□□□ 1.24
SQSTM1-215ENST00000514093 ZNF707Q96C28 371 aaPredicted RBP22.8■■□□□ 1.24
SQSTM1-215ENST00000514093 HERC2P3Q9BVR0 1158 aa22.8■■□□□ 1.24
SQSTM1-215ENST00000514093 PIDD1Q9HB75 910 aa22.8■■□□□ 1.24
SQSTM1-215ENST00000514093 IFT122Q9HBG6 1241 aa22.8■■□□□ 1.24
SQSTM1-215ENST00000514093 POTEMA6NI47 508 aa22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 F8W810 466 aa22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 PRPF3O43395 683 aaKnown RBP22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 LRRN2O75325 713 aa22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 PSMD10O75832 226 aa22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 CPA1P15085 419 aa22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 UBXN11Q5T124 520 aa22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 ANO5Q75V66 913 aa22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 BICD2Q8TD16 824 aa22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 RUBCNQ92622 972 aa22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 YTHDC1Q96MU7 727 aaKnown RBP22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 FOXQ1Q9C009 403 aa22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 MINDY3Q9H8M7 445 aa22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 ARHGEF3Q9NR81 526 aa22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 VPS54Q9P1Q0 977 aa22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 KANSL3Q9P2N6 904 aa22.79■■□□□ 1.24
SQSTM1-215ENST00000514093 CCDC196A0A1B0GTZ2 297 aa22.78■■□□□ 1.24
SQSTM1-215ENST00000514093 LAMP2P13473 410 aa22.78■■□□□ 1.24
SQSTM1-215ENST00000514093 GLULP15104 373 aa22.78■■□□□ 1.24
SQSTM1-215ENST00000514093 USP11P51784 963 aa22.78■■□□□ 1.24
SQSTM1-215ENST00000514093 RCAN1P53805 252 aa22.78■■□□□ 1.24
SQSTM1-215ENST00000514093 FGD1P98174 961 aa22.78■■□□□ 1.24
SQSTM1-215ENST00000514093 KIAA0319Q5VV43 1072 aa22.78■■□□□ 1.24
SQSTM1-215ENST00000514093 PHLDB3Q6NSJ2 640 aa22.78■■□□□ 1.24
SQSTM1-215ENST00000514093 DCLRE1AQ6PJP8 1040 aa22.78■■□□□ 1.24
SQSTM1-215ENST00000514093 ZC3H14Q6PJT7 736 aaKnown RBP22.78■■□□□ 1.24
SQSTM1-215ENST00000514093 GET4Q7L5D6 327 aaPredicted RBP22.78■■□□□ 1.24
SQSTM1-215ENST00000514093 GLYCTKQ8IVS8 523 aa22.78■■□□□ 1.24
SQSTM1-215ENST00000514093 B3GALT6Q96L58 329 aa22.78■■□□□ 1.24
SQSTM1-215ENST00000514093 SRGAP2CP0DJJ0 459 aa22.77■■□□□ 1.24
SQSTM1-215ENST00000514093 HOXA11P31270 313 aaPredicted RBP22.77■■□□□ 1.24
SQSTM1-215ENST00000514093 GLUD2P49448 558 aa22.77■■□□□ 1.24
SQSTM1-215ENST00000514093 CYP26C1Q6V0L0 522 aa22.77■■□□□ 1.24
SQSTM1-215ENST00000514093 COLGALT2Q8IYK4 626 aa22.77■■□□□ 1.24
SQSTM1-215ENST00000514093 RDM1Q8NG50 284 aa22.77■■□□□ 1.24
SQSTM1-215ENST00000514093 TBCKQ8TEA7 893 aa22.77■■□□□ 1.24
SQSTM1-215ENST00000514093 NXPE3Q969Y0 559 aa22.77■■□□□ 1.24
SQSTM1-215ENST00000514093 NT5C3AQ9H0P0 336 aa22.77■■□□□ 1.24
SQSTM1-215ENST00000514093 RXFP1Q9HBX9 757 aa22.77■■□□□ 1.24
SQSTM1-215ENST00000514093 DLL3Q9NYJ7 618 aa22.77■■□□□ 1.24
SQSTM1-215ENST00000514093 DPP7Q9UHL4 492 aa22.77■■□□□ 1.24
SQSTM1-215ENST00000514093 SSX2IPQ9Y2D8 614 aa22.77■■□□□ 1.24
SQSTM1-215ENST00000514093 COL4A3BPQ9Y5P4 624 aa22.77■■□□□ 1.24
SQSTM1-215ENST00000514093 NCOR2Q9Y618 2525 aa22.77■■□□□ 1.24
SQSTM1-215ENST00000514093 GAS2O43903 313 aaKnown RBP22.76■■□□□ 1.23
SQSTM1-215ENST00000514093 TDP2O95551 362 aa22.76■■□□□ 1.23
SQSTM1-215ENST00000514093 NPEPPSP55786 919 aa22.76■■□□□ 1.23
SQSTM1-215ENST00000514093 RSPO4Q2I0M5 234 aaPredicted RBP22.76■■□□□ 1.23
SQSTM1-215ENST00000514093 ELMSAN1Q6PJG2 1045 aa22.76■■□□□ 1.23
SQSTM1-215ENST00000514093 B3GNT9Q6UX72 402 aa22.76■■□□□ 1.23
SQSTM1-215ENST00000514093 ZNF579Q8NAF0 562 aaKnown RBP22.76■■□□□ 1.23
SQSTM1-215ENST00000514093 SMG8Q8ND04 991 aaKnown RBP22.76■■□□□ 1.23
SQSTM1-215ENST00000514093 TMEM143Q96AN5 459 aa22.76■■□□□ 1.23
SQSTM1-215ENST00000514093 RPP25Q9BUL9 199 aaKnown RBP22.76■■□□□ 1.23
SQSTM1-215ENST00000514093 RHOBTB2Q9BYZ6 727 aa22.76■■□□□ 1.23
SQSTM1-215ENST00000514093 RNF39Q9H2S5 420 aa22.76■■□□□ 1.23
SQSTM1-215ENST00000514093 BMP2KQ9NSY1 1161 aaPredicted RBP22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms