RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 RPS6KC1Q96S38 1066 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 PRELID1Q9Y255 219 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 CARD8Q9Y2G2 431 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 L3MBTL1Q9Y468 752 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 TESPA1A2RU30 521 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 KBTBD13C9JR72 458 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 BAIAP3O94812 1187 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 CCT3P49368 545 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 YWHAEP62258 255 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 RSBN1Q5VWQ0 802 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 RCSD1Q6JBY9 416 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 RFX6Q8HWS3 928 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 IL17REQ8NFR9 667 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 NDST4Q9H3R1 872 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 SLC8A2Q9UPR5 921 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 MRPL11Q9Y3B7 192 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 CDK12Q9NYV4 1490 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 AK9Q5TCS8 1911 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 IQANK1A0A1B0GTG1 560 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 CFAP69A5D8W1 941 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 H0YCG3 227 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 PFDN6O15212 129 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 EIF3HO15372 352 aaKnown RBP eCLIP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 SORBS3O60504 671 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 S100A1P23297 94 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 CCNE1P24864 410 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 PLIN5Q00G26 463 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 ALKBH5Q6P6C2 394 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 CCT8L2Q96SF2 557 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 UBE2OQ9C0C9 1292 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 SUN2Q9UH99 717 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 MED23Q9ULK4 1368 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 PLEKHG3A1L390 1219 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 CCDC22O60826 627 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 TSC22D2O75157 780 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 IL12RB1P42701 662 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 AARSP49588 968 aaKnown RBP eCLIP9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 PRAMEP78395 509 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 ITKQ08881 620 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 DCTN2Q13561 401 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 POTEEQ6S8J3 1075 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 ZBTB8OSQ8IWT0 167 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 AHI1Q8N157 1196 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 ZNF473Q8WTR7 871 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 PGBD1Q96JS3 809 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 NT5C1BQ96P26 610 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 CUEDC2Q9H467 287 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 TMEM165Q9HC07 324 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 CAMSAP1Q5T5Y3 1602 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 IL10P22301 178 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 KRT17Q04695 432 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 ZMYM1Q5SVZ6 1142 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 CENPUQ71F23 418 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 PCGF5Q86SE9 256 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 ELMOD1Q8N336 334 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 FAM81AQ8TBF8 368 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 INPP5DQ92835 1189 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 PAGE5Q96GU1 130 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 RNF26Q9BY78 433 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 FANCEQ9HB96 536 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 TCP10L2B9ZVM9 353 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 GOLGA8SH3BPF8 625 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 TRIM49P0CI25 452 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 TRIM49CP0CI26 452 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 CASP1P29466 404 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 ADORA1P30542 326 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 MFAP3P55082 362 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 SLC20A2Q08357 652 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 SLC12A1Q13621 1099 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 IQCB1Q15051 598 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 AOC3Q16853 763 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 LRRC36Q1X8D7 754 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 PPP6R3Q5H9R7 873 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 C10orf76Q5T2E6 689 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 CYB5D1Q6P9G0 228 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 SRRM1Q8IYB3 904 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 TERB1Q8NA31 727 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 HDAC6Q9UBN7 1215 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 ARHGEF28Q8N1W1 1705 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 AHCYL1O43865 530 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 CPP00450 1065 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 SERPING1P05155 500 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 IL6STP40189 918 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 GALNT17Q6IS24 598 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 SLFN12Q8IYM2 578 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 MB21D1Q8N884 522 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 GTF3C2Q8WUA4 911 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 LRRC39Q96DD0 335 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 MTERF3Q96E29 417 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 ANKRD27Q96NW4 1050 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 BBS2Q9BXC9 721 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 MAGEF1Q9HAY2 307 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 DCTN4Q9UJW0 460 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 TRIM33Q9UPN9 1127 aa9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 ZC3H13Q5T200 1668 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-218ENST00000513024 SPDYE16A6NNV3 312 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 CCDC188H7C350 402 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 KPNA4O00629 521 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 XPO1O14980 1071 aaKnown RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms