RNA–Protein interactions for RNA: ENST00000511421.5

SH3RF1-205, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 1,657 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-205ENST00000511421 HYAL1Q12794 435 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 SF3A1Q15459 793 aaKnown RBP12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 FAM187BQ17R55 369 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 AAK1Q2M2I8 961 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 NOMO2Q5JPE7 1267 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 GLB1LQ6UWU2 654 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 PPP4R3CPQ6ZMV5 832 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 SYMPKQ92797 1274 aaKnown RBP12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 ZNF558Q96NG5 402 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 CSRNP2Q9H175 543 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 TBC1D13Q9NVG8 400 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 IPPQ9Y573 584 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 ATG2AQ2TAZ0 1938 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 A0A1B0GUA9 196 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 NAMPTP43490 491 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 AFF1P51825 1210 aaKnown RBP12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 GRIN1Q05586 938 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 NCBP1Q09161 790 aaKnown RBP12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 CTC1Q2NKJ3 1217 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 TMEM119Q4V9L6 283 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 RINT1Q6NUQ1 792 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 C1orf186Q6ZWK4 172 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 DAW1Q8N136 415 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 SLC39A11Q8N1S5 342 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 KCTD17Q8N5Z5 321 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 CNNM3Q8NE01 707 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 KIFAP3Q92845 792 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 PABPC5Q96DU9 382 aaKnown RBP12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 PRIMPOLQ96LW4 560 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 AK8Q96MA6 479 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 RUSC1Q9BVN2 902 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 CCDC113Q9H0I3 377 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 RNF39Q9H2S5 420 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 RSAD1Q9HA92 442 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 PRMT7Q9NVM4 692 aaPredicted RBP12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 LZTS1Q9Y250 596 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 INPP5FQ9Y2H2 1132 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 PCDHGC5Q9Y5F6 944 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 NCOR1O75376 2440 aa12.85□□□□□ -0.35
SH3RF1-205ENST00000511421 TTLL13PA6NNM8 815 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 FSCN2O14926 492 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 GTF2F1P35269 517 aaKnown RBP eCLIP12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 PPM1AP35813 382 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 BCAR1P56945 870 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 ERVFC1P60507 584 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 PPP2R5AQ15172 486 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 PTPAQ15257 358 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 ZRSR1Q15695 479 aaKnown RBP12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 FAM173BQ6P4H8 233 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 ADGRD2Q7Z7M1 963 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 CDR2LQ86X02 465 aaPredicted RBP12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 ZBTB8OSQ8IWT0 167 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 MRPS27Q92552 414 aaKnown RBP12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 C2orf40Q9H1Z8 148 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 NRDE2Q9H7Z3 1164 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 SPG21Q9NZD8 308 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 HES2Q9Y543 173 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 CLIC4Q9Y696 253 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 CNTNAP2Q9UHC6 1331 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 PLXNA4Q9HCM2 1894 aa12.84□□□□□ -0.35
SH3RF1-205ENST00000511421 INPPL1O15357 1258 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 SLC26A4O43511 780 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 NCK2O43639 380 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 B4GALT3O60512 393 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 EDN1P05305 212 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 ITGA4P13612 1032 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 KCNA5P22460 613 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 LTBRP36941 435 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 MAPK7Q13164 816 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 LEXMQ3ZCV2 418 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 CABP7Q86V35 215 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 ZNF280BQ86YH2 543 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 SYT2Q8N9I0 419 aaPredicted RBP12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 DEPTORQ8TB45 409 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 ADAMTS19Q8TE59 1207 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 LRRC15Q8TF66 581 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 IFT74Q96LB3 600 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 PLIN2Q99541 437 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 KIFC3Q9BVG8 833 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 NT5C3AQ9H0P0 336 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 TLR9Q9NR96 1032 aa12.83□□□□□ -0.35
SH3RF1-205ENST00000511421 NT5C1B-RDH14C9J2C7 533 aa12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 ACKR2O00590 384 aa12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 STX6O43752 255 aa12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 HIP1RO75146 1068 aa12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 ZC3H11AO75152 810 aaKnown RBP eCLIP12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 DDHD2O94830 711 aa12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 PRKCBP05771 671 aa12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 GALTP07902 379 aa12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 GUCY2CP25092 1073 aa12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 LONP1P36776 959 aaKnown RBP12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 ALDH7A1P49419 539 aaKnown RBP12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 SLC12A3P55017 1021 aa12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 MAPK6Q16659 721 aa12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 SLC27A1Q6PCB7 646 aa12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 TMEM173Q86WV6 379 aaPredicted RBP12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 URGCPQ8TCY9 931 aa12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 NXF3Q9H4D5 531 aaKnown RBP12.83□□□□□ -0.36
SH3RF1-205ENST00000511421 UBN1Q9NPG3 1134 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms