RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 PLAAQ9Y263 795 aa7.38□□□□□ -1.23
NUP54-209ENST00000510569 LY86O95711 162 aa7.37□□□□□ -1.23
NUP54-209ENST00000510569 GNAT2P19087 354 aa7.37□□□□□ -1.23
NUP54-209ENST00000510569 CD69Q07108 199 aa7.37□□□□□ -1.23
NUP54-209ENST00000510569 METTL24Q5JXM2 366 aa7.37□□□□□ -1.23
NUP54-209ENST00000510569 RHOUQ7L0Q8 258 aa7.37□□□□□ -1.23
NUP54-209ENST00000510569 SLC25A43Q8WUT9 341 aaPredicted RBP7.37□□□□□ -1.23
NUP54-209ENST00000510569 LENG9Q96B70 501 aa7.37□□□□□ -1.23
NUP54-209ENST00000510569 PGBD4Q96DM1 585 aa7.37□□□□□ -1.23
NUP54-209ENST00000510569 FEZ1Q99689 392 aa7.37□□□□□ -1.23
NUP54-209ENST00000510569 PDCD2LQ9BRP1 358 aa7.37□□□□□ -1.23
NUP54-209ENST00000510569 FAM20BO75063 409 aa7.36□□□□□ -1.23
NUP54-209ENST00000510569 CDC45O75419 566 aa7.36□□□□□ -1.23
NUP54-209ENST00000510569 LSP1P33241 339 aa7.36□□□□□ -1.23
NUP54-209ENST00000510569 LSSP48449 732 aa7.36□□□□□ -1.23
NUP54-209ENST00000510569 TERF2Q15554 542 aa7.36□□□□□ -1.23
NUP54-209ENST00000510569 FAM214AQ32MH5 1076 aa7.36□□□□□ -1.23
NUP54-209ENST00000510569 MRGPREQ86SM8 312 aa7.36□□□□□ -1.23
NUP54-209ENST00000510569 AHI1Q8N157 1196 aa7.36□□□□□ -1.23
NUP54-209ENST00000510569 NRDE2Q9H7Z3 1164 aa7.36□□□□□ -1.23
NUP54-209ENST00000510569 HOXA3O43365 443 aaPredicted RBP7.35□□□□□ -1.23
NUP54-209ENST00000510569 NRP2O60462 931 aa7.35□□□□□ -1.23
NUP54-209ENST00000510569 WNT3AP56704 352 aa7.35□□□□□ -1.23
NUP54-209ENST00000510569 KRTAP15-1Q3LI76 137 aa7.35□□□□□ -1.23
NUP54-209ENST00000510569 CXorf67Q86X51 503 aaPredicted RBP7.35□□□□□ -1.23
NUP54-209ENST00000510569 DHX37Q8IY37 1157 aaKnown RBP7.35□□□□□ -1.23
NUP54-209ENST00000510569 ZNF276Q8N554 614 aa7.35□□□□□ -1.23
NUP54-209ENST00000510569 HAS1Q92839 578 aa7.35□□□□□ -1.23
NUP54-209ENST00000510569 MFSD3Q96ES6 412 aa7.35□□□□□ -1.23
NUP54-209ENST00000510569 AGAP2Q99490 1192 aa7.35□□□□□ -1.23
NUP54-209ENST00000510569 WNT8AQ9H1J5 351 aa7.35□□□□□ -1.23
NUP54-209ENST00000510569 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.35□□□□□ -1.23
NUP54-209ENST00000510569 SPTLC3Q9NUV7 552 aa7.35□□□□□ -1.23
NUP54-209ENST00000510569 NUMBLQ9Y6R0 609 aa7.35□□□□□ -1.23
NUP54-209ENST00000510569 A0A1W2PR48 441 aa7.34□□□□□ -1.23
NUP54-209ENST00000510569 RPS6KA4O75676 772 aa7.34□□□□□ -1.23
NUP54-209ENST00000510569 CFBP00751 764 aa7.34□□□□□ -1.23
NUP54-209ENST00000510569 ADCYAP1R1P41586 468 aa7.34□□□□□ -1.23
NUP54-209ENST00000510569 SCNN1BP51168 640 aa7.34□□□□□ -1.23
NUP54-209ENST00000510569 DALRD3Q5D0E6 543 aaKnown RBP7.34□□□□□ -1.23
NUP54-209ENST00000510569 TAS1R1Q7RTX1 841 aa7.34□□□□□ -1.23
NUP54-209ENST00000510569 KIAA0907Q7Z7F0 614 aaPredicted RBP7.34□□□□□ -1.23
NUP54-209ENST00000510569 RPUSD2Q8IZ73 545 aaKnown RBP7.34□□□□□ -1.23
NUP54-209ENST00000510569 MSL3Q8N5Y2 521 aaKnown RBP7.34□□□□□ -1.23
NUP54-209ENST00000510569 OR52N2Q8NGI0 321 aa7.34□□□□□ -1.23
NUP54-209ENST00000510569 OR2W6PQ8NHA6 318 aa7.34□□□□□ -1.23
NUP54-209ENST00000510569 GAB3Q8WWW8 586 aa7.34□□□□□ -1.23
NUP54-209ENST00000510569 GPR101Q96P66 508 aaPredicted RBP7.34□□□□□ -1.23
NUP54-209ENST00000510569 MS4A5Q9H3V2 200 aa7.34□□□□□ -1.23
NUP54-209ENST00000510569 TMPRSS11EQ9UL52 423 aa7.34□□□□□ -1.23
NUP54-209ENST00000510569 PPP2R3BQ9Y5P8 575 aa7.34□□□□□ -1.23
NUP54-209ENST00000510569 DMRT1Q9Y5R6 373 aa7.34□□□□□ -1.23
NUP54-209ENST00000510569 MRPL42Q9Y6G3 142 aaKnown RBP7.34□□□□□ -1.23
NUP54-209ENST00000510569 PRSS38A1L453 326 aa7.33□□□□□ -1.24
NUP54-209ENST00000510569 LCHNA4D1U4 455 aa7.33□□□□□ -1.24
NUP54-209ENST00000510569 TRIM24O15164 1050 aa7.33□□□□□ -1.24
NUP54-209ENST00000510569 FOXN1O15353 648 aa7.33□□□□□ -1.24
NUP54-209ENST00000510569 NR4A1P22736 598 aa7.33□□□□□ -1.24
NUP54-209ENST00000510569 MANFP55145 182 aaKnown RBP7.33□□□□□ -1.24
NUP54-209ENST00000510569 MRPL49Q13405 166 aaKnown RBP7.33□□□□□ -1.24
NUP54-209ENST00000510569 DOK3Q7L591 496 aa7.33□□□□□ -1.24
NUP54-209ENST00000510569 JAZF1Q86VZ6 243 aa7.33□□□□□ -1.24
NUP54-209ENST00000510569 RSAD2Q8WXG1 361 aa7.33□□□□□ -1.24
NUP54-209ENST00000510569 CPEB1Q9BZB8 566 aaKnown RBP7.33□□□□□ -1.24
NUP54-209ENST00000510569 USP18Q9UMW8 372 aa7.33□□□□□ -1.24
NUP54-209ENST00000510569 TMEM191CA6NGB0 347 aa7.32□□□□□ -1.24
NUP54-209ENST00000510569 GSG1L2A8MUP6 293 aa7.32□□□□□ -1.24
NUP54-209ENST00000510569 RAMP2O60895 175 aa7.32□□□□□ -1.24
NUP54-209ENST00000510569 HK1P19367 917 aa7.32□□□□□ -1.24
NUP54-209ENST00000510569 XPAP23025 273 aaPredicted RBP7.32□□□□□ -1.24
NUP54-209ENST00000510569 CASRP41180 1078 aa7.32□□□□□ -1.24
NUP54-209ENST00000510569 NRG3P56975 720 aa7.32□□□□□ -1.24
NUP54-209ENST00000510569 SART3Q15020 963 aaKnown RBP7.32□□□□□ -1.24
NUP54-209ENST00000510569 LYSMD2Q8IV50 215 aa7.32□□□□□ -1.24
NUP54-209ENST00000510569 SLC41A1Q8IVJ1 513 aa7.32□□□□□ -1.24
NUP54-209ENST00000510569 GLB1L2Q8IW92 636 aa7.32□□□□□ -1.24
NUP54-209ENST00000510569 GLB1L3Q8NCI6 653 aaPredicted RBP7.32□□□□□ -1.24
NUP54-209ENST00000510569 IL17RAQ96F46 866 aa7.32□□□□□ -1.24
NUP54-209ENST00000510569 EMC7Q9NPA0 242 aa7.32□□□□□ -1.24
NUP54-209ENST00000510569 FZD1Q9UP38 647 aa7.32□□□□□ -1.24
NUP54-209ENST00000510569 HS3ST4Q9Y661 456 aa7.32□□□□□ -1.24
NUP54-209ENST00000510569 DNAJC6O75061 913 aa7.31□□□□□ -1.24
NUP54-209ENST00000510569 PPFIA4O75335 1185 aa7.31□□□□□ -1.24
NUP54-209ENST00000510569 FKBP9O95302 570 aa7.31□□□□□ -1.24
NUP54-209ENST00000510569 IL2P60568 153 aa7.31□□□□□ -1.24
NUP54-209ENST00000510569 COL10A1Q03692 680 aa7.31□□□□□ -1.24
NUP54-209ENST00000510569 PPARAQ07869 468 aa7.31□□□□□ -1.24
NUP54-209ENST00000510569 LMBR1LQ6UX01 489 aa7.31□□□□□ -1.24
NUP54-209ENST00000510569 LRRC55Q6ZSA7 311 aa7.31□□□□□ -1.24
NUP54-209ENST00000510569 FRMD7Q6ZUT3 714 aa7.31□□□□□ -1.24
NUP54-209ENST00000510569 FKBP9P1Q75LS8 142 aa7.31□□□□□ -1.24
NUP54-209ENST00000510569 FAM83AQ86UY5 434 aa7.31□□□□□ -1.24
NUP54-209ENST00000510569 OR5M3Q8NGP4 307 aa7.31□□□□□ -1.24
NUP54-209ENST00000510569 CPPED1Q9BRF8 314 aaPredicted RBP7.31□□□□□ -1.24
NUP54-209ENST00000510569 TTPALQ9BTX7 342 aa7.31□□□□□ -1.24
NUP54-209ENST00000510569 LSM14BQ9BX40 385 aaKnown RBP7.31□□□□□ -1.24
NUP54-209ENST00000510569 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.31□□□□□ -1.24
NUP54-209ENST00000510569 KDM1AO60341 852 aa7.3□□□□□ -1.24
NUP54-209ENST00000510569 ITGB1P05556 798 aa7.3□□□□□ -1.24
NUP54-209ENST00000510569 GZMKP49863 264 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms