RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 UBAP1LF5GYI3 381 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 PPIP5K2O43314 1243 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 NMT1P30419 496 aaKnown RBP9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 RNASE9P60153 205 aaKnown RBP9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 GPC5P78333 572 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 RIPK1Q13546 671 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 QPCTQ16769 361 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 ABCB5Q2M3G0 1257 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 NBPF9Q3BBW0 867 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 PREPLQ4J6C6 727 aaPredicted RBP9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 DACT2Q5SW24 774 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 TCERG1LQ5VWI1 586 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 TRMT10CQ7L0Y3 403 aaKnown RBP9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 FAM71AQ8IYT1 594 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 MYCT1Q8N699 235 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 SAMD3Q8N6K7 520 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 RNF25Q96BH1 459 aaPredicted RBP9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 HVCN1Q96D96 273 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 SGSM3Q96HU1 749 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 THAP2Q9H0W7 228 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 SLC40A1Q9NP59 571 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 NOCTQ9UK39 431 aaKnown RBP9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 PRR12Q9ULL5 1215 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 SLC12A4Q9UP95 1085 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 COQ4Q9Y3A0 265 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 SCN9AQ15858 1988 aa9.96□□□□□ -0.81
PDGFRA-208ENST00000509490 CLIC2O15247 247 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 OAS1P00973 400 aaKnown RBP9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 IFT88Q13099 833 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 LRCH2Q5VUJ6 765 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 RELL1Q8IUW5 271 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 DAW1Q8N136 415 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 DYDC2Q96IM9 177 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 CELF4Q9BZC1 486 aaKnown RBP9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 ERVK-5Q9HDB9 667 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 RGL1Q9NZL6 768 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 UVRAGQ9P2Y5 699 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 HERC5Q9UII4 1024 aaKnown RBP9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 TRPC6Q9Y210 931 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 MGRN1O60291 552 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 MYCNP04198 464 aaPredicted RBP9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 DNA2P51530 1060 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 CEP55Q53EZ4 464 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 C1orf220Q5T0J3 134 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 FAM178BQ8IXR5 827 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 FUKQ8N0W3 1084 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 TRIM51Q9BSJ1 452 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 WHRNQ9P202 907 aa9.96□□□□□ -0.82
PDGFRA-208ENST00000509490 FOXN3O00409 490 aaPredicted RBP9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 DNM1LO00429 736 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 HPDP32754 393 aaPredicted RBP9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 SCTRP47872 440 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 GTF2BQ00403 316 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 PTP4A2Q12974 167 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 DENND2CQ68D51 928 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 RHBDF2Q6PJF5 856 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 NGLY1Q96IV0 654 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 IWS1Q96ST2 819 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 PPANQ9NQ55 473 aaKnown RBP9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 MTRF1LQ9UGC7 380 aaKnown RBP9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 GTF3C4Q9UKN8 822 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 TMX2Q9Y320 296 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 CCT8L1PA6NM43 557 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 DCDC2CA8MYV0 355 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 CAND2O75155 1236 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 POLR2MP0CAP2 368 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 POTEJP0CG39 1038 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 CHRNB2P17787 502 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 GTF2H1P32780 548 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 CETN1Q12798 172 aa9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 ENOX2Q16206 610 aaKnown RBP9.95□□□□□ -0.82
PDGFRA-208ENST00000509490 FSCN2O14926 492 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 TOM1O60784 492 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 TMOD1P28289 359 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 MAN1A1P33908 653 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 HSD17B4P51659 736 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 CYP4A11Q02928 519 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 ZC2HC1CQ53FD0 456 aaPredicted RBP9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 CRELD2Q6UXH1 353 aaPredicted RBP9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 SLC13A5Q86YT5 568 aaPredicted RBP9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 ZDHHC14Q8IZN3 488 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 CCDC197Q8NCU1 140 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 CYP2W1Q8TAV3 490 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 SHC3Q92529 594 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 TEKT3Q9BXF9 490 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 BCAS3Q9H6U6 928 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 TAS2R14Q9NYV8 317 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 MRPL11Q9Y3B7 192 aaKnown RBP9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 CFAP73A6NFT4 308 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 RIPK2O43353 540 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 KRT13P13646 458 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 COILP38432 576 aaPredicted RBP9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 RPL21P46778 160 aaKnown RBP9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 CAV1Q03135 178 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 COG2Q14746 738 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 TTC27Q6P3X3 843 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 FAM160B2Q86V87 743 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 PALB2Q86YC2 1186 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 LARGE2Q8N3Y3 721 aa9.94□□□□□ -0.82
PDGFRA-208ENST00000509490 FBXO25Q8TCJ0 367 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms