RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 C15orf39Q6ZRI6 1047 aa23.49■■□□□ 1.35
SQSTM1-210ENST00000506042 CCNT1O60563 726 aaKnown RBP23.48■■□□□ 1.35
SQSTM1-210ENST00000506042 SRGAP2CP0DJJ0 459 aa23.48■■□□□ 1.35
SQSTM1-210ENST00000506042 VCPP55072 806 aaKnown RBP23.48■■□□□ 1.35
SQSTM1-210ENST00000506042 LONRF3Q496Y0 759 aa23.48■■□□□ 1.35
SQSTM1-210ENST00000506042 C4orf19Q8IY42 314 aa23.48■■□□□ 1.35
SQSTM1-210ENST00000506042 TRIM6Q9C030 488 aaPredicted RBP23.48■■□□□ 1.35
SQSTM1-210ENST00000506042 ZSWIM4Q9H7M6 989 aa23.48■■□□□ 1.35
SQSTM1-210ENST00000506042 ITGA4P13612 1032 aa23.47■■□□□ 1.35
SQSTM1-210ENST00000506042 RFX1P22670 979 aa23.47■■□□□ 1.35
SQSTM1-210ENST00000506042 YWHABP31946 246 aaKnown RBP23.47■■□□□ 1.35
SQSTM1-210ENST00000506042 STK3Q13188 491 aa23.47■■□□□ 1.35
SQSTM1-210ENST00000506042 TOB2Q14106 344 aaPredicted RBP23.47■■□□□ 1.35
SQSTM1-210ENST00000506042 EPHA7Q15375 998 aa23.47■■□□□ 1.35
SQSTM1-210ENST00000506042 PLA2G4FQ68DD2 849 aa23.47■■□□□ 1.35
SQSTM1-210ENST00000506042 ASTLQ6HA08 431 aaPredicted RBP23.47■■□□□ 1.35
SQSTM1-210ENST00000506042 NOTUMQ6P988 496 aa23.47■■□□□ 1.35
SQSTM1-210ENST00000506042 PRPF31Q8WWY3 499 aaKnown RBP23.47■■□□□ 1.35
SQSTM1-210ENST00000506042 GJA10Q969M2 543 aa23.47■■□□□ 1.35
SQSTM1-210ENST00000506042 MTRQ99707 1265 aa23.47■■□□□ 1.35
SQSTM1-210ENST00000506042 SH2D3AQ9BRG2 576 aa23.47■■□□□ 1.35
SQSTM1-210ENST00000506042 PDRG1Q9NUG6 133 aa23.47■■□□□ 1.35
SQSTM1-210ENST00000506042 BRD1O95696 1058 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 EPCAMP16422 314 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 SLC11A1P49279 550 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 CLCN5P51795 746 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 CREMQ03060 361 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 LAMTOR4Q0VGL1 99 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 PTPN14Q15678 1187 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 XKR9Q5GH70 373 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 TMC5Q6UXY8 1006 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 MRPL10Q7Z7H8 261 aaKnown RBP23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 GPR149Q86SP6 731 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 SLC22A17Q8WUG5 538 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 CEP89Q96ST8 783 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 LXNQ9BS40 222 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 DHX33Q9H6R0 707 aaKnown RBP23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 IFT122Q9HBG6 1241 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 STK36Q9NRP7 1315 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 LIMD1Q9UGP4 676 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 FBXL21Q9UKT6 434 aa23.46■■□□□ 1.35
SQSTM1-210ENST00000506042 TMEM150BA6NC51 233 aa23.45■■□□□ 1.34
SQSTM1-210ENST00000506042 M0R2N6 131 aa23.45■■□□□ 1.34
SQSTM1-210ENST00000506042 STBD1O95210 358 aa23.45■■□□□ 1.34
SQSTM1-210ENST00000506042 NCLP19338 710 aaKnown RBP23.45■■□□□ 1.34
SQSTM1-210ENST00000506042 EMC2Q15006 297 aa23.45■■□□□ 1.34
SQSTM1-210ENST00000506042 ANKRD1Q15327 319 aa23.45■■□□□ 1.34
SQSTM1-210ENST00000506042 KSR1Q8IVT5 923 aa23.45■■□□□ 1.34
SQSTM1-210ENST00000506042 C12orf76Q8N812 135 aaPredicted RBP23.45■■□□□ 1.34
SQSTM1-210ENST00000506042 RNF149Q8NC42 400 aa23.45■■□□□ 1.34
SQSTM1-210ENST00000506042 AUTS2Q8WXX7 1259 aa23.45■■□□□ 1.34
SQSTM1-210ENST00000506042 KCNMB3Q9NPA1 279 aa23.45■■□□□ 1.34
SQSTM1-210ENST00000506042 IGSF9Q9P2J2 1179 aa23.45■■□□□ 1.34
SQSTM1-210ENST00000506042 EIF5BO60841 1220 aaKnown RBP23.44■■□□□ 1.34
SQSTM1-210ENST00000506042 SOD2P04179 222 aa23.44■■□□□ 1.34
SQSTM1-210ENST00000506042 TDGQ13569 410 aa23.44■■□□□ 1.34
SQSTM1-210ENST00000506042 NCAPH2Q6IBW4 605 aa23.44■■□□□ 1.34
SQSTM1-210ENST00000506042 SKAP1Q86WV1 359 aa23.44■■□□□ 1.34
SQSTM1-210ENST00000506042 PHF20Q9BVI0 1012 aa23.44■■□□□ 1.34
SQSTM1-210ENST00000506042 DNAJB4Q9UDY4 337 aa23.44■■□□□ 1.34
SQSTM1-210ENST00000506042 DAXXQ9UER7 740 aaPredicted RBP23.44■■□□□ 1.34
SQSTM1-210ENST00000506042 H0Y858 1186 aa23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 SLC37A4O43826 429 aa23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 EDIL3O43854 480 aa23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 SSBP05455 408 aaKnown RBP eCLIP23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 OR1G1P47890 313 aa23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 GLUD2P49448 558 aa23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 CLCN4P51793 760 aa23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 AK2P54819 239 aa23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 NPEPPSP55786 919 aa23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 FERMT3Q86UX7 667 aa23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 TMEM173Q86WV6 379 aaPredicted RBP23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 TMEM143Q96AN5 459 aa23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 KLHL5Q96PQ7 755 aa23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 RTP3Q9BQQ7 232 aa23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 COLEC11Q9BWP8 271 aa23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 VAV3Q9UKW4 847 aa23.43■■□□□ 1.34
SQSTM1-210ENST00000506042 INO80B-WBP1J3KQ70 363 aa23.42■■□□□ 1.34
SQSTM1-210ENST00000506042 NRP1O14786 923 aa23.42■■□□□ 1.34
SQSTM1-210ENST00000506042 GLUD1P00367 558 aa23.42■■□□□ 1.34
SQSTM1-210ENST00000506042 C1RP00736 705 aa23.42■■□□□ 1.34
SQSTM1-210ENST00000506042 POMCP01189 267 aa23.42■■□□□ 1.34
SQSTM1-210ENST00000506042 WEE2P0C1S8 567 aa23.42■■□□□ 1.34
SQSTM1-210ENST00000506042 POU5F1BQ06416 359 aa23.42■■□□□ 1.34
SQSTM1-210ENST00000506042 AGMOQ6ZNB7 445 aa23.42■■□□□ 1.34
SQSTM1-210ENST00000506042 PIK3AP1Q6ZUJ8 805 aa23.42■■□□□ 1.34
SQSTM1-210ENST00000506042 CMASQ8NFW8 434 aaPredicted RBP23.42■■□□□ 1.34
SQSTM1-210ENST00000506042 HDAC7Q8WUI4 952 aa23.42■■□□□ 1.34
SQSTM1-210ENST00000506042 NXPE3Q969Y0 559 aa23.42■■□□□ 1.34
SQSTM1-210ENST00000506042 HERC2P3Q9BVR0 1158 aa23.42■■□□□ 1.34
SQSTM1-210ENST00000506042 FAM86C1Q9NVL1 165 aa23.42■■□□□ 1.34
SQSTM1-210ENST00000506042 KCNJ14Q9UNX9 436 aa23.42■■□□□ 1.34
SQSTM1-210ENST00000506042 EML1O00423 815 aa23.41■■□□□ 1.34
SQSTM1-210ENST00000506042 DGAT1O75907 488 aa23.41■■□□□ 1.34
SQSTM1-210ENST00000506042 ASGR2P07307 311 aa23.41■■□□□ 1.34
SQSTM1-210ENST00000506042 CNPP09543 421 aaKnown RBP23.41■■□□□ 1.34
SQSTM1-210ENST00000506042 TRIM29Q14134 588 aa23.41■■□□□ 1.34
SQSTM1-210ENST00000506042 ZNF280BQ86YH2 543 aa23.41■■□□□ 1.34
SQSTM1-210ENST00000506042 RPS6KC1Q96S38 1066 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms